CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLOCG00000004887
(
Lepisosteus oculatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSLOCG00000004887
T097625_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SNAI2
M00221_2.00
Homo sapiens
HACYTGH
DCARGTD
PBM
Barrera et al.(2016)
SNAI2_REF
0.775
0.894
SNAI2
M02873_2.00
Homo sapiens
VCACCTGYN
NRCAGGTGB
SELEX
Jolma et al.(2013)
SNAI2_1
0.775
0.894
SNAI2
M04392_2.00
Homo sapiens
YGCACCTGYY
RRCAGGTGCR
SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX
0.775
0.894
SNAI2
M04394_2.00
Homo sapiens
YRCACCTGYY
RRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX
0.775
0.894
SNAI2
M08853_2.00
Homo sapiens
NVCACCTGYY
RRCAGGTGBN
Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A
0.775
0.894
Snai2
M08973_2.00
Mus musculus
VNRCACCTGYY
RRCAGGTGYNB
Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A
0.775
0.894
SNAI2
M10102_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_01
0.775
0.894
SNAI2
M10103_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_02
0.775
0.894
SNAI2
M10104_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6
0.775
0.894
SNAI2
M00220_2.00
Homo sapiens
NHACCTGY
RCAGGTDN
PBM
Barrera et al.(2016)
SNAI2_D119E
0.775
0.894
SNAI2
M04393_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX
0.775
0.894
SNAI2
M04395_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX
0.775
0.894
SNAI2
M00222_2.00
Homo sapiens
HACYTGHNNN
NNNDCARGTD
PBM
Barrera et al.(2016)
SNAI2_T234I
0.771
0.885
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLOCP00000005873
C2H2 ZF
23
45
FECFDCHKAYYTFSGLAKHKQLH
ENSLOCP00000005873
C2H2 ZF
46
76
CEWQCHRYFNCKYCDKEYVSLGALKMHIRTH
ENSLOCP00000005873
C2H2 ZF
80
102
CVCKLCGKAFSRPWLLQGHIRTH
ENSLOCP00000005873
C2H2 ZF
108
130
FSCPHCSRAFADRSNLRAHLQTH
ENSLOCP00000005873
C2H2 ZF
136
156
YQCKSCSKTFSRISLLSKHEE
Links
Other
C2H2 ZF
family TFs
Other
Lepisosteus oculatus
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMXG00000011013
Astyanax mexicanus
ENSAMXG00000011013
I
0.816
ENSLACG00000004705
Latimeria chalumnae
ENSLACG00000004705
I
0.793
ENSMEUG00000009510
Macropus eugenii
ENSMEUG00000009510
I
0.779
SNAI2
Anolis carolinensis
ENSACAG00000012332
I
0.775
ENSAMEG00000009606
Ailuropoda melanoleuca
ENSAMEG00000009606
I
0.775
ENSAPLG00000003920
Anas platyrhynchos
ENSAPLG00000003920
I
0.775
SNAI2
Canis familiaris
ENSCAFG00000006638
I
0.775
SNAI2
Choloepus hoffmanni
ENSCHOG00000007046
I
0.775
SNAI2
Callithrix jacchus
ENSCJAG00000013499
I
0.775
ENSCPOG00000014827
Cavia porcellus
ENSCPOG00000014827
I
0.775
ENSCSAG00000014787
Chlorocebus sabaeus
ENSCSAG00000014787
I
0.775
SNAI2
Dasypus novemcinctus
ENSDNOG00000035997
I
0.775
SNAI2
Equus caballus
ENSECAG00000010120
I
0.775
ENSFALG00000005762
Ficedula albicollis
ENSFALG00000005762
I
0.775
SNAI2
Felis catus
ENSFCAG00000015779
I
0.775
SNAI2
Homo sapiens
ENSG00000019549
D
0.775
ENSGALG00000015241
Gallus gallus
ENSGALG00000015241
I
0.775
SNAI2
Gorilla gorilla
ENSGGOG00000000959
I
0.775
ENSLACG00000005413
Latimeria chalumnae
ENSLACG00000005413
I
0.775
SNAI2
Loxodonta africana
ENSLAFG00000009299
I
0.775
SNAI2
Meleagris gallopavo
ENSMGAG00000010813
I
0.775
SNAI2
Microcebus murinus
ENSMICG00000000335
I
0.775
SNAI2
Myotis lucifugus
ENSMLUG00000001086
I
0.775
SNAI2
Macaca mulatta
ENSMMUG00000016195
I
0.775
SNAI2
Monodelphis domestica
ENSMODG00000010173
I
0.775
ENSMPUG00000010793
Mustela putorius furo
ENSMPUG00000010793
I
0.775
Snai2
Mus musculus
ENSMUSG00000022676
D
0.775
ENSNLEG00000013421
Nomascus leucogenys
ENSNLEG00000013421
I
0.775
SNAI2
Ornithorhynchus anatinus
ENSOANG00000007267
I
0.775
SNAI2
Oryctolagus cuniculus
ENSOCUG00000012254
I
0.775
SNAI2
Otolemur garnettii
ENSOGAG00000010500
I
0.775
ENSPANG00000017540
Papio anubis
ENSPANG00000017540
I
0.775
SNAI2
Procavia capensis
ENSPCAG00000001788
I
0.775
ENSPPYG00000018578
Pongo abelii
ENSPPYG00000018578
I
0.775
ENSPSIG00000016395
Pelodiscus sinensis
ENSPSIG00000016395
I
0.775
SNAI2
Pan troglodytes
ENSPTRG00000020235
I
0.775
SNAI2
Pteropus vampyrus
ENSPVAG00000009457
I
0.775
Snai2
Rattus norvegicus
ENSRNOG00000047699
I
0.775
ENSSHAG00000004205
Sarcophilus harrisii
ENSSHAG00000004205
I
0.775
ENSSTOG00000028743
Ictidomys tridecemlineatus
ENSSTOG00000028743
I
0.775
SNAI2
Taeniopygia guttata
ENSTGUG00000010914
I
0.775
Aan_R012932
Calypte anna
Aan_R012932
I
0.775
Afo_R005870
Aptenodytes forsteri
Afo_R005870
I
0.775
Alligator_sinensis_CCG016283.1
Alligator sinensis
Alligator_sinensis_CCG016283.1
I
0.775
Brh_R006038
Buceros rhinoceros
Brh_R006038
I
0.775
ENSP00000380034
Macaca fascicularis
ENSP00000380034
I
0.775
Gfo_R012649
Geospiza fortis
Gfo_R012649
I
0.775
Myotis_brandtii_Snai2_10018131
Myotis brandtii
Myotis_brandtii_Snai2_10018131
I
0.775
Ogr04681
Ophisaurus gracilis
Ogr04681
I
0.775
Pvit_15376
Pogona vitticeps
Pvit_15376
I
0.775
Tal_R003673
Tyto alba
Tal_R003673
I
0.775
AAB34088
Xenopus laevis
AAB34088
I
0.775
AAK54135
Xenopus tropicalis
AAK54135
I
0.775
AAK54137
Xenopus laevis
AAK54137
I
0.775
AAK54139
Xenopus laevis
AAK54139
I
0.775
snai2
Xenopus tropicalis
XB-GENE-487371
I
0.775
snai2.L
Xenopus laevis
XB-GENE-6255814
I
0.775
snai2.S
Xenopus laevis
XB-GENE-865699
I
0.775
ENSPSIG00000004262
Pelodiscus sinensis
ENSPSIG00000004262
N
0.773
SNAI2
Bos taurus
ENSBTAG00000013227
I
0.768
ENSOARG00000013030
Ovis aries
ENSOARG00000013030
I
0.768
ENSP00000020945-D1
Bos grunniens
ENSP00000020945-D1
I
0.768
ENSSSCG00000024404
Sus scrofa
ENSSSCG00000024404
I
0.767
ENSSSCG00000026570
Sus scrofa
ENSSSCG00000026570
I
0.767
snai2
Gasterosteus aculeatus
ENSGACG00000017935
I
0.758