Pvit_03702 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_03702 T136993_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PATZ1
M08287_2.00 		Homo sapiens
CCCCDCCC
GGGHGGGG		 ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME 		0.825 0.993
PATZ1
M08864_2.00 		Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN		 Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C 		0.825 0.993
PATZ1
M10137_2.00 		Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN		 Transfac
Matys et al.(2006)
V$MAZR_01 		0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_03702 C2H2 ZF 145 167
Pvit_03702 C2H2 ZF 209 230
Pvit_03702 C2H2 ZF 236 258
Pvit_03702 C2H2 ZF 266 289
Pvit_03702 C2H2 ZF 295 317
Pvit_03702 C2H2 ZF 349 371

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28179.m000458 Ricinus communis 28179.m000458 N
Aquca_069_00025 Aquilegia coerulea Aquca_069_00025 N
AT3G53440 Arabidopsis thaliana AT3G53440 N
Bo8g082820 Brassica oleracea Bo8g082820 N
Bo8g082840 Brassica oleracea Bo8g082840 N
Bostr.11793s0050 Boechera stricta Bostr.11793s0050 N
Cagra.0612s0070 Capsella grandiflora Cagra.0612s0070 N
Carubv10016941m.g Capsella rubella Carubv10016941m.g N
cassava20168.m1 Manihot esculenta cassava20168.m1 N
cassava44568.m1 Manihot esculenta cassava44568.m1 N
chr2.CM0177.470.nc Lotus japonicus chr2.CM0177.470.nc N
Ciclev10026033m.g Citrus clementina Ciclev10026033m.g N
Cla014299 Citrullus lanatus Cla014299 N
Cucsa.103750 Cucumis sativus Cucsa.103750 N
evm.TU.supercontig_129.20 Carica papaya evm.TU.supercontig_129.20 N
fgenesh2_kg.5__1710__AT3G53440.2 Arabidopsis lyrata fgenesh2_kg.5__1710__AT3G53440.2 N
gene05559-v1.0-hybrid Fragaria vesca gene05559-v1.0-hybrid N
GLYMA01G02380 Glycine max GLYMA01G02380 N
GLYMA09G33600 Glycine max GLYMA09G33600 N
Gorai.003G035800 Gossypium raimondii Gorai.003G035800 N
Gorai.007G058000 Gossypium raimondii Gorai.007G058000 N
Lus10002159.g Linum usitatissimum Lus10002159.g N
Lus10039632.g Linum usitatissimum Lus10039632.g N
MDP0000312273 Malus domestica MDP0000312273 N
MTR_7g076850 Medicago truncatula MTR_7g076850 N
orange1.1g037355m.g Citrus sinensis orange1.1g037355m.g N
PGSC0003DMG400000839 Solanum tuberosum PGSC0003DMG400000839 N
PK06741.1 Cannabis sativa PK06741.1 N
Pm002284 Prunus mume Pm002284 N
POPTR_0006s29510 Populus trichocarpa POPTR_0006s29510 N
POPTR_0018s04230 Populus trichocarpa POPTR_0018s04230 N
PRUPE_ppa003947mg Prunus persica PRUPE_ppa003947mg N
SapurV1A.0263s0050 Salix purpurea SapurV1A.0263s0050 N
SapurV1A.0493s0270 Salix purpurea SapurV1A.0493s0270 N
Solyc01g068540.2 Solanum lycopersicum Solyc01g068540.2 N
TCM_000914 Theobroma cacao TCM_000914 N