fgenesh2_pg.scaffold_136000067 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh2_pg.scaffold_136000067 T139164_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.774 0.904
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.774 0.904
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.774 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_136000067 C2H2 ZF 334 356
fgenesh2_pg.scaffold_136000067 C2H2 ZF 362 384
fgenesh2_pg.scaffold_136000067 C2H2 ZF 660 682
fgenesh2_pg.scaffold_136000067 C2H2 ZF 688 710
fgenesh2_pg.scaffold_136000067 C2H2 ZF 718 741

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001734 Aedes aegypti AAEL001734 I 0.000
AALB004290 Anopheles albimanus AALB004290 I 0.000
AARA007509 Anopheles arabiensis AARA007509 I 0.000
AATE010112 Anopheles atroparvus AATE010112 I 0.000
ACEP18226 Atta cephalotes ACEP18226 I 0.000
ACHR009808 Anopheles christyi ACHR009808 I 0.000
ACOM024837 Anopheles coluzzii ACOM024837 I 0.000
ACUA007612 Anopheles culicifacies ACUA007612 I 0.000
ACYPI56663 Acyrthosiphon pisum ACYPI56663 I 0.000
ADIR008104 Anopheles dirus ADIR008104 I 0.000
AFAF003449 Anopheles farauti AFAF003449 I 0.000
AFUN010689 Anopheles funestus AFUN010689 I 0.000
AGAP006018 Anopheles gambiae AGAP006018 I 0.000
AMAM005405 Anopheles maculatus AMAM005405 I 0.000
AMEC009148 Anopheles melas AMEC009148 I 0.000
AMEM002094 Anopheles merus AMEM002094 I 0.000
AMIN010926 Anopheles minimus AMIN010926 I 0.000
AQUA005657 Anopheles quadriannulatus AQUA005657 I 0.000
ASTEI06308 Anopheles stephensi ASTEI06308 I 0.000
BGIBMGA012232 Bombyx mori BGIBMGA012232 I 0.000
Cflo_05255--XP_001121063.1_APIME Camponotus floridanus Cflo_05255--XP_001121063.1_APIME I 0.000
CLEC000425 Cimex lectularius CLEC000425 I 0.000
CPIJ011217 Culex quinquefasciatus CPIJ011217 I 0.000
CpipJ_CPIJ011217 Culex pipiens CpipJ_CPIJ011217 I 0.000
DAPPUDRAFT_299763 Daphnia pulex DAPPUDRAFT_299763 I 0.000
bab1 Drosophila melanogaster FBgn0004870 D 0.000
bab2 Drosophila melanogaster FBgn0025525 I 0.000
bab Drosophila virilis FBgn0064311 I 0.000
GF10078 Drosophila ananassae FBgn0087119 I 0.000
GF10081 Drosophila ananassae FBgn0087122 I 0.000
GG14622 Drosophila erecta FBgn0106878 I 0.000
GG14628 Drosophila erecta FBgn0106884 I 0.000
GH15670 Drosophila grimshawi FBgn0123141 I 0.000
GI12710 Drosophila mojavensis FBgn0135467 I 0.000
GI12712 Drosophila mojavensis FBgn0135469 I 0.000
GL16678 Drosophila persimilis FBgn0154282 I 0.000
GL25461 Drosophila persimilis FBgn0163045 I 0.000
GM14236 Drosophila sechellia FBgn0169162 I 0.000
GM14241 Drosophila sechellia FBgn0169167 I 0.000
GD13495 Drosophila simulans FBgn0185206 I 0.000
GD13499 Drosophila simulans FBgn0185210 I 0.000
GJ12696 Drosophila virilis FBgn0199933 I 0.000
GK16858 Drosophila willistoni FBgn0218858 I 0.000
GK16863 Drosophila willistoni FBgn0218863 I 0.000
GE20983 Drosophila yakuba FBgn0238267 I 0.000
GE20986 Drosophila yakuba FBgn0238269 I 0.000
GA23169 Drosophila pseudoobscura FBgn0244571 I 0.000
GA28271 Drosophila pseudoobscura FBgn0249634 I 0.000
GB40871 Apis mellifera GB40871 I 0.000
HHAL003166-PA Halyomorpha halys HHAL003166-PA I 0.000
HMEL008789 Heliconius melpomene HMEL008789 I 0.000
Hsal_00151--XP_001121063.1_APIME Harpegnathos saltator Hsal_00151--XP_001121063.1_APIME I 0.000
KGM_03925 Danaus plexippus KGM_03925 I 0.000
L798_02764 Zootermopsis nevadensis L798_02764 I 0.000
LCUP006237 Lucilia cuprina LCUP006237 I 0.000
LCUP015100 Lucilia cuprina LCUP015100 I 0.000
LDEC013196 Leptinotarsa decemlineata LDEC013196 I 0.000
MCINX015686 Melitaea cinxia MCINX015686 I 0.000
MDOA008247 Musca domestica MDOA008247 I 0.000
MDOA013491 Musca domestica MDOA013491 I 0.000
MESCA009218 Megaselia scalaris MESCA009218 I 0.000
NV19234 Nasonia vitripennis NV19234 I 0.000
PHUM501420 Pediculus humanus PHUM501420 I 0.000
PPAI009278 Phlebotomus papatasi PPAI009278 I 0.000
RPRC003948 Rhodnius prolixus RPRC003948 I 0.000
SINV15831 Solenopsis invicta SINV15831 I 0.000
TC003627 Tribolium castaneum TC003627 I 0.000
YQE_07459 Dendroctonus ponderosae YQE_07459 I 0.000