fgenesh2_pg.scaffold_136000067 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh2_pg.scaffold_136000067 T139164_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.774 0.904
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.774 0.904
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.774 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_136000067 C2H2 ZF 334 356
fgenesh2_pg.scaffold_136000067 C2H2 ZF 362 384
fgenesh2_pg.scaffold_136000067 C2H2 ZF 660 682
fgenesh2_pg.scaffold_136000067 C2H2 ZF 688 710
fgenesh2_pg.scaffold_136000067 C2H2 ZF 718 741

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BCL11A Anolis carolinensis ENSACAG00000015159 I 0.774
ENSAMEG00000015813 Ailuropoda melanoleuca ENSAMEG00000015813 I 0.774
ENSAPLG00000007735 Anas platyrhynchos ENSAPLG00000007735 I 0.774
BCL11A Callithrix jacchus ENSCJAG00000009226 I 0.774
BCL11A Cavia porcellus ENSCPOG00000007587 I 0.774
BCL11A Dasypus novemcinctus ENSDNOG00000019842 I 0.774
Bcl11a Dipodomys ordii ENSDORG00000010064 I 0.774
BCL11A Erinaceus europaeus ENSEEUG00000010958 I 0.774
ENSFALG00000011123 Ficedula albicollis ENSFALG00000011123 I 0.774
BCL11A Felis catus ENSFCAG00000027154 I 0.774
BCL11A Homo sapiens ENSG00000119866 D 0.774
ENSGALG00000007866 Gallus gallus ENSGALG00000007866 I 0.774
BCL11A Gorilla gorilla ENSGGOG00000007337 I 0.774
BCL11A Loxodonta africana ENSLAFG00000003101 I 0.774
ENSMEUG00000001829 Macropus eugenii ENSMEUG00000001829 I 0.774
BCL11A Meleagris gallopavo ENSMGAG00000013042 I 0.774
BCL11A Microcebus murinus ENSMICG00000015052 I 0.774
ENSMMUG00000011303 Macaca mulatta ENSMMUG00000011303 I 0.774
Bcl11a Mus musculus ENSMUSG00000000861 I 0.774
BCL11A Oryctolagus cuniculus ENSOCUG00000023948 I 0.774
ENSPSIG00000013644 Pelodiscus sinensis ENSPSIG00000013644 I 0.774
BCL11A Pteropus vampyrus ENSPVAG00000000042 I 0.774
Bcl11a Rattus norvegicus ENSRNOG00000007049 I 0.774
ENSSHAG00000015804 Sarcophilus harrisii ENSSHAG00000015804 I 0.774
BCL11A Sus scrofa ENSSSCG00000008392 I 0.774
ENSSTOG00000004523 Ictidomys tridecemlineatus ENSSTOG00000004523 I 0.774
BCL11A Taeniopygia guttata ENSTGUG00000006790 I 0.774
ENSTSYG00000009153 Tarsius syrichta ENSTSYG00000009153 I 0.774
BCL11A Tursiops truncatus ENSTTRG00000006191 I 0.774
BCL11A Vicugna pacos ENSVPAG00000000491 I 0.774
Aan_R006276 Calypte anna Aan_R006276 I 0.774
Afo_R011357 Aptenodytes forsteri Afo_R011357 I 0.774
Alligator_sinensis_CCG008166.1 Alligator sinensis Alligator_sinensis_CCG008166.1 I 0.774
ENSBTAP00000023987-D2 Bos grunniens ENSBTAP00000023987-D2 I 0.774
ENSP00000338774 Macaca fascicularis ENSP00000338774 I 0.774
Gfo_R008167 Geospiza fortis Gfo_R008167 I 0.774
Pvit_18645 Pogona vitticeps Pvit_18645 I 0.774
bcl11a Xenopus tropicalis XB-GENE-486641 I 0.774
ENSLACG00000003560 Latimeria chalumnae ENSLACG00000003560 I 0.772
BCL11A Ornithorhynchus anatinus ENSOANG00000012402 I 0.772
Cmyd_10008592 Chelonia mydas Cmyd_10008592 I 0.772
SPU_018909 Strongylocentrotus purpuratus SPU_018909 I 0.767
bcl11aa Danio rerio ENSDARG00000061352 I 0.766
bcl11ab Danio rerio ENSDARG00000063153 I 0.766
ENSONIG00000018855 Oreochromis niloticus ENSONIG00000018855 I 0.766
bcl11ab Oryzias latipes ENSORLG00000013169 I 0.766
ENSPFOG00000007302 Poecilia formosa ENSPFOG00000007302 I 0.766
bcl11ab Tetraodon nigroviridis ENSTNIG00000012076 I 0.766
bcl11ab Takifugu rubripes ENSTRUG00000013751 I 0.766
bcl11ab Gasterosteus aculeatus ENSGACG00000019222 I 0.764
ENSLOCG00000016135 Lepisosteus oculatus ENSLOCG00000016135 I 0.764
ENSLOCG00000008679 Lepisosteus oculatus ENSLOCG00000008679 I 0.763
ENSONIG00000011060 Oreochromis niloticus ENSONIG00000011060 I 0.763
bcl11ba Oryzias latipes ENSORLG00000010826 I 0.763
bcl11ba Tetraodon nigroviridis ENSTNIG00000008283 I 0.763
bcl11ba Takifugu rubripes ENSTRUG00000003531 I 0.763
ENSGMOG00000015842 Gadus morhua ENSGMOG00000015842 I 0.762
bcl11ba Gasterosteus aculeatus ENSGACG00000013118 I 0.760
ENSGMOG00000012414 Gadus morhua ENSGMOG00000012414 I 0.760
ENSPFOG00000007224 Poecilia formosa ENSPFOG00000007224 I 0.760
ENSXMAG00000020344 Xiphophorus maculatus ENSXMAG00000020344 I 0.760