Carubv10027554m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10027554m.g T142749_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.805 0.913
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.805 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027554m C2H2 ZF 308 330

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Contig1106.1.g91 Oxytricha trifallax Contig1106.1.g91 N
Contig15259.0.g17 Oxytricha trifallax Contig15259.0.g17 N
GSPATT00026886001 Paramecium tetraurelia GSPATT00026886001 I
GSPATT00028733001 Paramecium tetraurelia GSPATT00028733001 I
GSPATT00028898001 Paramecium tetraurelia GSPATT00028898001 I
TTHERM_00202940 Tetrahymena thermophila TTHERM_00202940 D
TTHERM_00721600 Tetrahymena thermophila TTHERM_00721600 I
TTHERM_01009970 Tetrahymena thermophila TTHERM_01009970 I