Gorai.005G154300 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.005G154300 T143014_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.773 0.927
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.773 0.927
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G154300.1 C2H2 ZF 134 155
Gorai.005G154300.1 C2H2 ZF 156 180

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000320401 Angiostrongylus cantonensis ACAC_0000320401 N 0.000
ACOC_0000564301 Angiostrongylus costaricensis ACOC_0000564301 N 0.000
ALUE_0000326401 Ascaris lumbricoides ALUE_0000326401 I 0.000
ANCCAN_03591 Ancylostoma caninum ANCCAN_03591 N 0.000
ANCCEY_10263 Ancylostoma ceylanicum ANCCEY_10263 N 0.000
ASIM_0001335601 Anisakis simplex ASIM_0001335601 I 0.000
ASU_05094 Ascaris suum ASU_05094 I 0.000
BGLB003270 Biomphalaria glabrata BGLB003270 I 0.000
Bm7588 Brugia malayi Bm7588 I 0.000
BTMF_0000617301 Brugia timori BTMF_0000617301 I 0.000
CBG19808 Caenorhabditis briggsae CBG19808 I 0.000
CBN32559 Caenorhabditis brenneri CBN32559 I 0.000
CGI_10024700 Crassostrea gigas CGI_10024700 N 0.000
CLEC000050 Cimex lectularius CLEC000050 N 0.000
CLEC001633 Cimex lectularius CLEC001633 N 0.000
DME_0000215901 Dracunculus medinensis DME_0000215901 I 0.000
EEL_0000071901 Elaeophora elaphi EEL_0000071901 I 0.000
EFV48635 Trichinella spiralis EFV48635 N 0.000
GB46398 Apis mellifera GB46398 N 0.000
GPUH_0000579801 Gongylonema pulchrum GPUH_0000579801 I 0.000
HPLM_0000323401 Haemonchus placei HPLM_0000323401 I 0.000
L596_g21771 Steinernema carpocapsae L596_g21771 N 0.000
L596_g3194 Steinernema carpocapsae L596_g3194 I 0.000
L892_g28108 Steinernema scapterisci L892_g28108 N 0.000
L898_g30246 Steinernema monticolum L898_g30246 I 0.000
LDEC005996 Leptinotarsa decemlineata LDEC005996 N 0.000
LOAG_04491 Loa loa LOAG_04491 I 0.000
nAv.1.0.1.g06570 Acanthocheilonema viteae nAv.1.0.1.g06570 I 0.000
nDi.2.2.2.g01315 Dirofilaria immitis nDi.2.2.2.g01315 I 0.000
nDi.2.2.2.g10294 Dirofilaria immitis nDi.2.2.2.g10294 I 0.000
NECAME_03378 Necator americanus NECAME_03378 N 0.000
nLs.2.1.2.g06633 Litomosoides sigmodontis nLs.2.1.2.g06633 I 0.000
nOo.2.0.1.g09202 Onchocerca ochengi nOo.2.0.1.g09202 I 0.000
nRc.2.0.1.g42489 Romanomermis culicivorax nRc.2.0.1.g42489 N 0.000
OFLC_0001455401 Onchocerca flexuosa OFLC_0001455401 I 0.000
PTRK_0001316500 Parastrongyloides trichosuri PTRK_0001316500 I 0.000
RPRC001027 Rhodnius prolixus RPRC001027 N 0.000
Sakowv30032301m.g Saccoglossus kowalevskii Sakowv30032301m.g N 0.000
SPAL_0001536200 Strongyloides papillosus SPAL_0001536200 I 0.000
SPU_014528 Strongylocentrotus purpuratus SPU_014528 N 0.000
SPU_021150 Strongylocentrotus purpuratus SPU_021150 I 0.000
SSTP_0000025200 Strongyloides stercoralis SSTP_0000025200 I 0.000
SVE_0152400 Strongyloides venezuelensis SVE_0152400 I 0.000
ces-2 Caenorhabditis elegans WBGene00000469 D 0.000
WBGene00237430 Onchocerca volvulus WBGene00237430 I 0.000
WUBG_01294 Wuchereria bancrofti WUBG_01294 I 0.000