Pavir.Ab02618 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ab02618 T143306_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.786 0.818
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.786 0.818
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.785 0.795
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.769 0.659
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02618.1.p C2H2 ZF 187 208
Pavir.Ab02618.1.p C2H2 ZF 248 269

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L798_06130 Zootermopsis nevadensis L798_06130 N
LLOJ002763 Lutzomyia longipalpis LLOJ002763 N
LLOJ008285 Lutzomyia longipalpis LLOJ008285 N
PPAI010195 Phlebotomus papatasi PPAI010195 N