Pavir.Ab02618 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ab02618 T143306_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.786 0.818
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.786 0.818
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.785 0.795
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.769 0.659
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02618.1.p C2H2 ZF 187 208
Pavir.Ab02618.1.p C2H2 ZF 248 269

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB04G28040 Oryza brachyantha OB04G28040 I 0.798
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.798
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.792
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.792
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.792
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.792
OBART04G21020 Oryza barthii OBART04G21020 I 0.792
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.792
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.792
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.792
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.792
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.792
OS04G0552700 Oryza sativa OS04G0552700 I 0.792
Si010615m.g Setaria italica Si010615m.g I 0.792
ZAT4 Arabidopsis thaliana AT2G45120 D 0.786
ZAT9 Arabidopsis thaliana AT3G60580 D 0.786
Bo4g104940 Brassica oleracea Bo4g104940 I 0.786
Bo6g077190 Brassica oleracea Bo6g077190 I 0.786
Bo8g095300 Brassica oleracea Bo8g095300 I 0.786
Bra003422 Brassica rapa Bra003422 I 0.786
Bra007545 Brassica rapa Bra007545 I 0.786
Bra014483 Brassica rapa Bra014483 I 0.786
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.786
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.786
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.786
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.786
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.786
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.786
30174.m008818 Ricinus communis 30174.m008818 I 0.786
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.786
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.786
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.786
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.786
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.786
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.786
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.786
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.786
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.786
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.786
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.786
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.786
ZAT1 Arabidopsis thaliana AT1G02030 D 0.785
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.785
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.785
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.785
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.785
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.785
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.785
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.785
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.782
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.782
OBART02G26700 Oryza barthii OBART02G26700 I 0.782
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.782
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.782
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.782
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.782
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.782
OS02G0659500 Oryza sativa OS02G0659500 I 0.782
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.782
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.780
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.776
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.776
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.776
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.776
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.776
Ca_23672 Cicer arietinum Ca_23672 I 0.776
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.776
mgf017082m Mimulus guttatus mgf017082m I 0.776
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.776
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.776
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.776
mgf021094m Mimulus guttatus mgf021094m I 0.775
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.772
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.770
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.770
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.770
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.770
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.770
29661.m000908 Ricinus communis 29661.m000908 I 0.770
30170.m013751 Ricinus communis 30170.m013751 I 0.770
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.770
mgf006006m Mimulus guttatus mgf006006m I 0.770
AZF2 Arabidopsis thaliana AT3G19580 D 0.769
Bo1g113530 Brassica oleracea Bo1g113530 I 0.769
Bo5g113850 Brassica oleracea Bo5g113850 I 0.769
Bra022436 Brassica rapa Bra022436 I 0.769
Bra038219 Brassica rapa Bra038219 I 0.769
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.769
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.769
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.769
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.769
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.769
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.769
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.769
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.769
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.769
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.769
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.769
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.769
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.769
OS12G0583700 Oryza sativa OS12G0583700 I 0.769
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.769
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.769
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.769
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.769
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.769
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.769
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.769
Si023013m.g Setaria italica Si023013m.g I 0.769
TCM_007214 Theobroma cacao TCM_007214 I 0.769
TCM_034720 Theobroma cacao TCM_034720 I 0.769
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.769
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.769
Ca_01586 Cicer arietinum Ca_01586 I 0.769
Ca_05641 Cicer arietinum Ca_05641 I 0.769
Ca_18364 Cicer arietinum Ca_18364 I 0.769
Pm005390 Prunus mume Pm005390 I 0.769
Pm021284 Prunus mume Pm021284 I 0.769
28152.m000908 Ricinus communis 28152.m000908 I 0.769
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.769
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.769
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.769
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.769
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.769
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.769
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.769
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.769
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.769
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.769
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.769
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.769
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.769
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.769
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.769
MDP0000198015 Malus domestica MDP0000198015 I 0.769
MDP0000319225 Malus domestica MDP0000319225 I 0.769
MDP0000573176 Malus domestica MDP0000573176 I 0.769
MDP0000762756 Malus domestica MDP0000762756 I 0.769
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.769
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.769
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.769
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.769
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.769
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.769
PK10188.1 Cannabis sativa PK10188.1 I 0.769
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.769
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.769
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.766
Bo3g037560 Brassica oleracea Bo3g037560 I 0.762
Bo4g195370 Brassica oleracea Bo4g195370 I 0.762
Bra000372 Brassica rapa Bra000372 I 0.762
Bra040325 Brassica rapa Bra040325 I 0.762
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.762
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.762
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.762
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.762
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.762
mgf021789m Mimulus guttatus mgf021789m I 0.760
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.759
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.759
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.759