Gorai.004G164000 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.004G164000 T143010_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.820 0.870
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.820 0.870
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.797 0.848
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.794 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.771 0.717
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.771 0.717
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.771 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.770 0.696
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.761 0.717
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G164000.1 C2H2 ZF 167 189
Gorai.004G164000.1 C2H2 ZF 216 238
Gorai.004G164000.2 C2H2 ZF 163 185
Gorai.004G164000.2 C2H2 ZF 212 234
Gorai.004G164000.3 C2H2 ZF 163 185
Gorai.004G164000.3 C2H2 ZF 212 234

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.826
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.826
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.826
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.820
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.820
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.820
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.820
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.820
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.820
ZAT4 Arabidopsis thaliana AT2G45120 D 0.820
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.820
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.820
ZAT9 Arabidopsis thaliana AT3G60580 D 0.820
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.819
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.817
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.817
Ca_23672 Cicer arietinum Ca_23672 I 0.817
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.817
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.817
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.817
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.815
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.815
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.815
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.811
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.805
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.801
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.799
ZAT1 Arabidopsis thaliana AT1G02030 D 0.797
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.797
Bra040325 Brassica rapa Bra040325 I 0.796
Bra007545 Brassica rapa Bra007545 I 0.796
Bo6g077190 Brassica oleracea Bo6g077190 I 0.796
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.796
Bo4g195370 Brassica oleracea Bo4g195370 I 0.796
Bo4g104940 Brassica oleracea Bo4g104940 I 0.796
Bra014483 Brassica rapa Bra014483 I 0.796
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.796
Bo8g095300 Brassica oleracea Bo8g095300 I 0.796
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.796
30174.m008818 Ricinus communis 30174.m008818 I 0.796
Bra003422 Brassica rapa Bra003422 I 0.796
Bra000372 Brassica rapa Bra000372 I 0.796
Bo3g037560 Brassica oleracea Bo3g037560 I 0.796
30170.m013751 Ricinus communis 30170.m013751 I 0.795
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.795
mgf006006m Mimulus guttatus mgf006006m I 0.795
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.795
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.795
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.794
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.794
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.794
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.794
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.794
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.794
TCM_034720 Theobroma cacao TCM_034720 I 0.794
Pm005390 Prunus mume Pm005390 I 0.794
Ca_18364 Cicer arietinum Ca_18364 I 0.794
Ca_01586 Cicer arietinum Ca_01586 I 0.794
Pm021284 Prunus mume Pm021284 I 0.794
28152.m000908 Ricinus communis 28152.m000908 I 0.794
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.794
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.794
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.794
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.794
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.794
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.794
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.794
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.794
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.794
TCM_007214 Theobroma cacao TCM_007214 I 0.794
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.794
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.794
MDP0000573176 Malus domestica MDP0000573176 I 0.794
MDP0000762756 Malus domestica MDP0000762756 I 0.794
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.794
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.794
Bra038219 Brassica rapa Bra038219 I 0.794
MDP0000319225 Malus domestica MDP0000319225 I 0.794
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.794
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.794
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.794
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.794
Bra022436 Brassica rapa Bra022436 I 0.794
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.794
PK10188.1 Cannabis sativa PK10188.1 I 0.794
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.794
AZF2 Arabidopsis thaliana AT3G19580 D 0.794
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.794
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.794
Bo1g113530 Brassica oleracea Bo1g113530 I 0.794
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.794
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.794
Bo5g113850 Brassica oleracea Bo5g113850 I 0.794
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.794
MDP0000198015 Malus domestica MDP0000198015 I 0.794
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.794
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.794
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.794
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.794
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.794
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.794
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.793
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.793
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.793
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.793
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.792
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.792
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.791
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.791
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.787
mgf021094m Mimulus guttatus mgf021094m I 0.786
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.785
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.785
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.785
OBART04G21020 Oryza barthii OBART04G21020 I 0.785
OB04G28040 Oryza brachyantha OB04G28040 I 0.785
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.785
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.785
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.785
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.785
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.785
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.785
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.785
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.785
Si010615m.g Setaria italica Si010615m.g I 0.785
OS04G0552700 Oryza sativa OS04G0552700 I 0.785
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.785
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.784
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.784
TCM_014903 Theobroma cacao TCM_014903 I 0.781
mgf017082m Mimulus guttatus mgf017082m I 0.781
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.778
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.778
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.778
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.778
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.777
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.777
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.777
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.777
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.776
OS12G0583700 Oryza sativa OS12G0583700 I 0.776
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.776
Si023013m.g Setaria italica Si023013m.g I 0.776
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.776
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.776
AZF3 Arabidopsis thaliana AT5G43170 I 0.776
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.776
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.776
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.776
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.775
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.775
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.775
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.775
OBART02G26700 Oryza barthii OBART02G26700 I 0.775
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.775
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.775
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.775
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.775
OS02G0659500 Oryza sativa OS02G0659500 I 0.775
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.775
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.773
30147.m014242 Ricinus communis 30147.m014242 I 0.773
Bo3g142840 Brassica oleracea Bo3g142840 I 0.771
Bra010922 Brassica rapa Bra010922 I 0.771
TCM_000780 Theobroma cacao TCM_000780 I 0.771
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.771
Bo7g048650 Brassica oleracea Bo7g048650 I 0.771
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.771
ZAT10 Arabidopsis thaliana AT1G27730 D 0.771
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.770
ZAT6 Arabidopsis thaliana AT5G04340 D 0.770
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.770
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.770
Bo7g065200 Brassica oleracea Bo7g065200 I 0.770
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.770
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.770
Bra009464 Brassica rapa Bra009464 I 0.770
Bo9g181170 Brassica oleracea Bo9g181170 I 0.770
Bra033666 Brassica rapa Bra033666 I 0.770
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.770
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.770
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.770
Ca_05641 Cicer arietinum Ca_05641 I 0.770
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.770
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.770
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.770
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.770
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.770
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.769
29661.m000908 Ricinus communis 29661.m000908 I 0.769
Bra018817 Brassica rapa Bra018817 I 0.769
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.769
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.768
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.768
mgf021789m Mimulus guttatus mgf021789m I 0.767
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.767
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.767
Cla022966 Citrullus lanatus Cla022966 I 0.766
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.766
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.766
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.766
Gorai.001G049300 Gossypium raimondii Gorai.001G049300 I 0.765
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.764
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.761
AZF1 Arabidopsis thaliana AT5G67450 D 0.761
Bo1g081350 Brassica oleracea Bo1g081350 I 0.761
Bra012914 Brassica rapa Bra012914 I 0.761
Bra037845 Brassica rapa Bra037845 I 0.761
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.761
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.761
Bo2g168030 Brassica oleracea Bo2g168030 I 0.761
Bra031834 Brassica rapa Bra031834 I 0.761
Bo9g019120 Brassica oleracea Bo9g019120 I 0.761
Bra029985 Brassica rapa Bra029985 I 0.761
Cla001400 Citrullus lanatus Cla001400 I 0.760
OB03G42170 Oryza brachyantha OB03G42170 I 0.760