Carubv10017660m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10017660m.g T142729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.827 0.978
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.827 0.957
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.802 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.717
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.717
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.717
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017660m C2H2 ZF 201 223
Carubv10017660m C2H2 ZF 254 276

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT4 Arabidopsis thaliana AT2G45120 D 0.827
ZAT9 Arabidopsis thaliana AT3G60580 D 0.827
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.827
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.827
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.827
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.827
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.827
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.822
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.822
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.821
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.821
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.821
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.821
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.821
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.820
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.820
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.816
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.812
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.811
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.811
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.811
Ca_23672 Cicer arietinum Ca_23672 I 0.811
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.811
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.811
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.806
Bo3g037560 Brassica oleracea Bo3g037560 I 0.803
Bo4g104940 Brassica oleracea Bo4g104940 I 0.803
Bo4g195370 Brassica oleracea Bo4g195370 I 0.803
Bo6g077190 Brassica oleracea Bo6g077190 I 0.803
Bo8g095300 Brassica oleracea Bo8g095300 I 0.803
Bra000372 Brassica rapa Bra000372 I 0.803
Bra003422 Brassica rapa Bra003422 I 0.803
Bra007545 Brassica rapa Bra007545 I 0.803
Bra014483 Brassica rapa Bra014483 I 0.803
Bra040325 Brassica rapa Bra040325 I 0.803
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.803
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.803
ZAT1 Arabidopsis thaliana AT1G02030 D 0.802
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.802
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.800
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.800
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.800
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.800
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.800
30170.m013751 Ricinus communis 30170.m013751 I 0.800
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.800
mgf006006m Mimulus guttatus mgf006006m I 0.800
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.800
AZF2 Arabidopsis thaliana AT3G19580 D 0.799
Bo1g113530 Brassica oleracea Bo1g113530 I 0.799
Bo5g113850 Brassica oleracea Bo5g113850 I 0.799
Bra022436 Brassica rapa Bra022436 I 0.799
Bra038219 Brassica rapa Bra038219 I 0.799
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.799
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.799
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.799
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.799
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.799
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.799
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.799
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.799
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.799
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.799
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.799
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.799
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.799
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.799
TCM_007214 Theobroma cacao TCM_007214 I 0.799
TCM_034720 Theobroma cacao TCM_034720 I 0.799
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.799
Ca_01586 Cicer arietinum Ca_01586 I 0.799
Ca_18364 Cicer arietinum Ca_18364 I 0.799
Pm005390 Prunus mume Pm005390 I 0.799
Pm021284 Prunus mume Pm021284 I 0.799
28152.m000908 Ricinus communis 28152.m000908 I 0.799
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.799
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.799
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.799
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.799
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.799
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.799
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.799
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.799
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.799
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.799
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.799
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.799
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.799
MDP0000198015 Malus domestica MDP0000198015 I 0.799
MDP0000319225 Malus domestica MDP0000319225 I 0.799
MDP0000573176 Malus domestica MDP0000573176 I 0.799
MDP0000762756 Malus domestica MDP0000762756 I 0.799
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.799
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.799
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.799
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.799
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.799
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.799
PK10188.1 Cannabis sativa PK10188.1 I 0.799
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.799
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.799
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.797
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.797
30174.m008818 Ricinus communis 30174.m008818 I 0.797
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.797
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.796
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.796
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.792
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.789
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.789
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.788
mgf021094m Mimulus guttatus mgf021094m I 0.787
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.786
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.786
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.786
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.786
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.786
OB04G28040 Oryza brachyantha OB04G28040 I 0.786
OBART04G21020 Oryza barthii OBART04G21020 I 0.786
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.786
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.786
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.786
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.786
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.786
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.786
OS04G0552700 Oryza sativa OS04G0552700 I 0.786
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.786
Si010615m.g Setaria italica Si010615m.g I 0.786
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.786
mgf017082m Mimulus guttatus mgf017082m I 0.782
TCM_014903 Theobroma cacao TCM_014903 I 0.780
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.777
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.777
ZAT10 Arabidopsis thaliana AT1G27730 D 0.776
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.776
Bo3g142840 Brassica oleracea Bo3g142840 I 0.776
Bo7g048650 Brassica oleracea Bo7g048650 I 0.776
Bra010922 Brassica rapa Bra010922 I 0.776
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.776
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.776
OBART02G26700 Oryza barthii OBART02G26700 I 0.776
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.776
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.776
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.776
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.776
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.776
OS02G0659500 Oryza sativa OS02G0659500 I 0.776
TCM_000780 Theobroma cacao TCM_000780 I 0.776
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.776
29661.m000908 Ricinus communis 29661.m000908 I 0.776
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.776
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.776
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.776
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.776
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.776
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.776
ZAT6 Arabidopsis thaliana AT5G04340 D 0.775
Bo7g065200 Brassica oleracea Bo7g065200 I 0.775
Bo9g181170 Brassica oleracea Bo9g181170 I 0.775
Bra009464 Brassica rapa Bra009464 I 0.775
Bra018817 Brassica rapa Bra018817 I 0.775
Bra033666 Brassica rapa Bra033666 I 0.775
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.775
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.775
Ca_05641 Cicer arietinum Ca_05641 I 0.775
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.775
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.775
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.775
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.775
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.775
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.775
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.775
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.775
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.775
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.775
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.775
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.774
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.774
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.773
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.773
30147.m014242 Ricinus communis 30147.m014242 I 0.772
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.772
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.770
AZF3 Arabidopsis thaliana AT5G43170 I 0.769
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.769
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.769
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.769
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.769
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.769
OS12G0583700 Oryza sativa OS12G0583700 I 0.769
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.769
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.769
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.769
Si023013m.g Setaria italica Si023013m.g I 0.769
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.769
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.768
AZF1 Arabidopsis thaliana AT5G67450 D 0.766
Bo1g081350 Brassica oleracea Bo1g081350 I 0.766
Bo2g168030 Brassica oleracea Bo2g168030 I 0.766
Bo9g019120 Brassica oleracea Bo9g019120 I 0.766
Bra012914 Brassica rapa Bra012914 I 0.766
Bra029985 Brassica rapa Bra029985 I 0.766
Bra031834 Brassica rapa Bra031834 I 0.766
Bra037845 Brassica rapa Bra037845 I 0.766
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.766
Gorai.001G049300 Gossypium raimondii Gorai.001G049300 I 0.766
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.766
OB03G42170 Oryza brachyantha OB03G42170 I 0.765
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.762
Cla001400 Citrullus lanatus Cla001400 I 0.761
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.760
mgf021789m Mimulus guttatus mgf021789m I 0.760
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.759
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.759
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.759
Cla022966 Citrullus lanatus Cla022966 I 0.759
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.759
AT2G28710 Arabidopsis thaliana AT2G28710 I 0.756
Bo4g069230 Brassica oleracea Bo4g069230 I 0.756
Bo4g166690 Brassica oleracea Bo4g166690 I 0.756
Bra011931 Brassica rapa Bra011931 I 0.756
Bra035678 Brassica rapa Bra035678 I 0.756
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.756
scaffold_401325.1 Arabidopsis lyrata scaffold_401325.1 I 0.756
Bostr.27991s0045 Boechera stricta Bostr.27991s0045 I 0.756
Cagra.8274s0001 Capsella grandiflora Cagra.8274s0001 I 0.756
Carubv10024179m.g Capsella rubella Carubv10024179m.g I 0.756
Thhalv10017375m.g Eutrema salsugineum Thhalv10017375m.g I 0.756