BRADI4G03410 (Brachypodium distachyon)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 BRADI4G03410 T082025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.770 0.773
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.769 0.727
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.769 0.705
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.769 0.682
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G03410.1 C2H2 ZF 61 81
BRADI4G03410.1 C2H2 ZF 119 141

Links

Other C2H2 ZF family TFs
Other Brachypodium distachyon TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.805
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.791
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.786
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.781
OS12G0583700 Oryza sativa OS12G0583700 I 0.781
Si023013m.g Setaria italica Si023013m.g I 0.781
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.780
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.780
28152.m000908 Ricinus communis 28152.m000908 I 0.780
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.780
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.780
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.780
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.780
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.778
29661.m000908 Ricinus communis 29661.m000908 I 0.777
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.776
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.776
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.775
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.775
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.775
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.775
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.775
Ca_23672 Cicer arietinum Ca_23672 I 0.775
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.775
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.775
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.775
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.775
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.775
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.774
mgf021789m Mimulus guttatus mgf021789m I 0.774
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.774
AZF2 Arabidopsis thaliana AT3G19580 D 0.770
Bo1g113530 Brassica oleracea Bo1g113530 I 0.770
Bo5g113850 Brassica oleracea Bo5g113850 I 0.770
Bra022436 Brassica rapa Bra022436 I 0.770
Bra038219 Brassica rapa Bra038219 I 0.770
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.770
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.770
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.770
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.770
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.770
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.770
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.770
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.770
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.770
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.770
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.770
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.770
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.770
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.770
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.770
TCM_007214 Theobroma cacao TCM_007214 I 0.770
TCM_034720 Theobroma cacao TCM_034720 I 0.770
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.770
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.770
Ca_01586 Cicer arietinum Ca_01586 I 0.770
Ca_05641 Cicer arietinum Ca_05641 I 0.770
Ca_18364 Cicer arietinum Ca_18364 I 0.770
Pm005390 Prunus mume Pm005390 I 0.770
Pm021284 Prunus mume Pm021284 I 0.770
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.770
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.770
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.770
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.770
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.770
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.770
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.770
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.770
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.770
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.770
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.770
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.770
MDP0000198015 Malus domestica MDP0000198015 I 0.770
MDP0000319225 Malus domestica MDP0000319225 I 0.770
MDP0000573176 Malus domestica MDP0000573176 I 0.770
MDP0000762756 Malus domestica MDP0000762756 I 0.770
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.770
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.770
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.770
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.770
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.770
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.770
PK10188.1 Cannabis sativa PK10188.1 I 0.770
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.770
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.770
ZAT1 Arabidopsis thaliana AT1G02030 D 0.769
ZAT4 Arabidopsis thaliana AT2G45120 D 0.769
ZAT9 Arabidopsis thaliana AT3G60580 D 0.769
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.769
Bo4g104940 Brassica oleracea Bo4g104940 I 0.769
Bo6g077190 Brassica oleracea Bo6g077190 I 0.769
Bo8g095300 Brassica oleracea Bo8g095300 I 0.769
Bra003422 Brassica rapa Bra003422 I 0.769
Bra007545 Brassica rapa Bra007545 I 0.769
Bra014483 Brassica rapa Bra014483 I 0.769
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.769
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.769
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.769
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.769
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.769
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.769
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.769
OB04G28040 Oryza brachyantha OB04G28040 I 0.769
OBART04G21020 Oryza barthii OBART04G21020 I 0.769
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.769
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.769
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.769
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.769
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.769
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.769
OS04G0552700 Oryza sativa OS04G0552700 I 0.769
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.769
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.769
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.769
Si010615m.g Setaria italica Si010615m.g I 0.769
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.769
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.769
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.769
30170.m013751 Ricinus communis 30170.m013751 I 0.769
30174.m008818 Ricinus communis 30174.m008818 I 0.769
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.769
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.769
mgf006006m Mimulus guttatus mgf006006m I 0.769
mgf017082m Mimulus guttatus mgf017082m I 0.769
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.769
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.769
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.769
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.769
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.769
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.769
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.769
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.769
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.769
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.769
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.769
mgf021094m Mimulus guttatus mgf021094m I 0.768
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.768
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.768
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.766
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.766
Cla022966 Citrullus lanatus Cla022966 I 0.763
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.763
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.762
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.760
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.759
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.759
OBART02G26700 Oryza barthii OBART02G26700 I 0.759
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.759
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.759
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.759
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.759
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.759
OS02G0659500 Oryza sativa OS02G0659500 I 0.759
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.759
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.759
Si032711m.g Setaria italica Si032711m.g I 0.758
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.758
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.758
Bra018817 Brassica rapa Bra018817 I 0.756
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.756
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.756
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.756
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.756