evm.TU.supercontig_249.7 (Carica papaya)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 evm.TU.supercontig_249.7 T142907_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.913
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.779 0.891
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.696
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.772 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.772 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.772 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.763 0.783
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.763 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_249.7 C2H2 ZF 100 122
evm.model.supercontig_249.7 C2H2 ZF 153 175

Links

Other C2H2 ZF family TFs
Other Carica papaya TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.822
Ca_05641 Cicer arietinum Ca_05641 I 0.822
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.822
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.821
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.816
OS12G0583700 Oryza sativa OS12G0583700 I 0.816
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.811
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.811
Bo1g113530 Brassica oleracea Bo1g113530 I 0.803
Bo5g113850 Brassica oleracea Bo5g113850 I 0.803
Bra022436 Brassica rapa Bra022436 I 0.803
Bra038219 Brassica rapa Bra038219 I 0.803
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.803
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.803
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.803
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.803
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.803
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.803
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.803
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.803
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.803
TCM_007214 Theobroma cacao TCM_007214 I 0.803
TCM_034720 Theobroma cacao TCM_034720 I 0.803
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.803
Ca_01586 Cicer arietinum Ca_01586 I 0.803
Ca_18364 Cicer arietinum Ca_18364 I 0.803
Pm005390 Prunus mume Pm005390 I 0.803
Pm021284 Prunus mume Pm021284 I 0.803
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.803
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.803
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.803
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.803
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.803
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.803
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.803
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.803
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.803
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.803
MDP0000198015 Malus domestica MDP0000198015 I 0.803
MDP0000319225 Malus domestica MDP0000319225 I 0.803
MDP0000573176 Malus domestica MDP0000573176 I 0.803
MDP0000762756 Malus domestica MDP0000762756 I 0.803
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.803
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.803
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.803
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.803
PK10188.1 Cannabis sativa PK10188.1 I 0.803
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.803
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.803
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.802
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.802
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.802
AZF2 Arabidopsis thaliana AT3G19580 D 0.798
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.798
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.798
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.798
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.797
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.797
30170.m013751 Ricinus communis 30170.m013751 I 0.796
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.794
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.794
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.794
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.794
30174.m008818 Ricinus communis 30174.m008818 I 0.793
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.793
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.793
mgf017082m Mimulus guttatus mgf017082m I 0.793
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.792
Si023013m.g Setaria italica Si023013m.g I 0.792
mgf021094m Mimulus guttatus mgf021094m I 0.792
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.792
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.792
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.788
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.788
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.788
28152.m000908 Ricinus communis 28152.m000908 I 0.788
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.788
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.788
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.787
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.787
mgf006006m Mimulus guttatus mgf006006m I 0.787
29661.m000908 Ricinus communis 29661.m000908 I 0.785
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.784
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.782
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.782
OB03G31780 Oryza brachyantha OB03G31780 I 0.782
OBART03G22570 Oryza barthii OBART03G22570 I 0.782
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.782
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.782
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.782
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.782
OS03G0437200 Oryza sativa OS03G0437200 I 0.782
Si037343m.g Setaria italica Si037343m.g N 0.782
ZAT6 Arabidopsis thaliana AT5G04340 D 0.779
Bo9g181170 Brassica oleracea Bo9g181170 I 0.779
Bra009464 Brassica rapa Bra009464 I 0.779
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.779
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.779
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.779
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.779
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.779
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.779
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.779
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.779
Bo5g052290 Brassica oleracea Bo5g052290 I 0.778
Bo7g048650 Brassica oleracea Bo7g048650 I 0.778
Bra032845 Brassica rapa Bra032845 I 0.778
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.778
ZAT1 Arabidopsis thaliana AT1G02030 D 0.776
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.776
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.776
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.776
ZAT4 Arabidopsis thaliana AT2G45120 D 0.775
ZAT9 Arabidopsis thaliana AT3G60580 D 0.775
Bo4g104940 Brassica oleracea Bo4g104940 I 0.775
Bo6g077190 Brassica oleracea Bo6g077190 I 0.775
Bo8g095300 Brassica oleracea Bo8g095300 I 0.775
Bra003422 Brassica rapa Bra003422 I 0.775
Bra007545 Brassica rapa Bra007545 I 0.775
Bra014483 Brassica rapa Bra014483 I 0.775
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.775
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.775
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.775
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.775
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.775
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.775
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.775
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.775
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.775
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.775
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.775
Bo7g065200 Brassica oleracea Bo7g065200 I 0.774
Bra033666 Brassica rapa Bra033666 I 0.774
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.774
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.774
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.773
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.773
ZAT10 Arabidopsis thaliana AT1G27730 D 0.772
Bo3g142840 Brassica oleracea Bo3g142840 I 0.772
Bra010922 Brassica rapa Bra010922 I 0.772
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.772
TCM_000780 Theobroma cacao TCM_000780 I 0.772
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.770
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.770
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.770
Si032711m.g Setaria italica Si032711m.g I 0.770
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.770
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.770
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.770
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.770
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.769
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.769
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.769
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.769
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.769
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.769
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.769
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.769
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.769
OB04G28040 Oryza brachyantha OB04G28040 I 0.769
OBART04G21020 Oryza barthii OBART04G21020 I 0.769
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.769
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.769
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.769
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.769
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.769
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.769
OS04G0552700 Oryza sativa OS04G0552700 I 0.769
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.769
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.769
Si010615m.g Setaria italica Si010615m.g I 0.769
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.769
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.769
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.769
Ca_23672 Cicer arietinum Ca_23672 I 0.769
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.769
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.769
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.769
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.769
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.769
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.769
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.769
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.769
AZF3 Arabidopsis thaliana AT5G43170 I 0.768
Bo1g081350 Brassica oleracea Bo1g081350 I 0.768
Bra012914 Brassica rapa Bra012914 I 0.768
Bra029985 Brassica rapa Bra029985 I 0.768
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.768
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.768
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.768
BGIOSGA010469 Oryza indica BGIOSGA010469 N 0.767
BGIOSGA010470 Oryza indica BGIOSGA010470 N 0.767
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N 0.767
F775_12743 Aegilops tauschii F775_12743 N 0.767
GRMZM5G883760 Zea mays GRMZM5G883760 N 0.767
LPERR03G19190 Leersia perrieri LPERR03G19190 N 0.767
OB03G31790 Oryza brachyantha OB03G31790 N 0.767
OBART03G22560 Oryza barthii OBART03G22560 N 0.767
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N 0.767
OPUNC03G21190 Oryza punctata OPUNC03G21190 N 0.767
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N 0.767
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N 0.767
OS03G0437100 Oryza sativa OS03G0437100 N 0.767
OS11G0340477 Oryza sativa OS11G0340477 N 0.767
Si037516m.g Setaria italica Si037516m.g N 0.767
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N 0.767
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N 0.767
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.766
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.765
mgf021789m Mimulus guttatus mgf021789m I 0.765
Bra018817 Brassica rapa Bra018817 I 0.764
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.764
AZF1 Arabidopsis thaliana AT5G67450 D 0.763
Bo2g168030 Brassica oleracea Bo2g168030 I 0.763
Bo9g019120 Brassica oleracea Bo9g019120 I 0.763
Bra031834 Brassica rapa Bra031834 I 0.763
Bra037845 Brassica rapa Bra037845 I 0.763
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.763
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.762
Sb01g031920 Sorghum bicolor Sb01g031920 N 0.761
OB03G42170 Oryza brachyantha OB03G42170 I 0.760
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.760
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.759
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.759
OBART02G26700 Oryza barthii OBART02G26700 I 0.759
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.759
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.759
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.759
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.759
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.759
OS02G0659500 Oryza sativa OS02G0659500 I 0.759
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.759
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.759
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.759
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.758
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.758
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.758