gw1.254.15.1 (Physcomitrella patens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gw1.254.15.1 T140054_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.761
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.759 0.739
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.757 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.254.15.1 C2H2 ZF 94 116
gw1.254.15.1 C2H2 ZF 158 180

Links

Other C2H2 ZF family TFs
Other Physcomitrella patens TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT3 Arabidopsis thaliana AT4G35280 I 0.786
Bra017706 Brassica rapa Bra017706 I 0.786
scaffold_700593.1 Arabidopsis lyrata scaffold_700593.1 I 0.786
Bostr.7867s1389 Boechera stricta Bostr.7867s1389 I 0.786
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I 0.786
gene18205-v1.0-hybrid Fragaria vesca gene18205-v1.0-hybrid I 0.782
Gorai.006G104800 Gossypium raimondii Gorai.006G104800 I 0.782
Gorai.012G006900 Gossypium raimondii Gorai.012G006900 I 0.782
GSMUA_Achr1G01260_001 Musa acuminata GSMUA_Achr1G01260_001 I 0.781
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I 0.781
Bo7g117320 Brassica oleracea Bo7g117320 I 0.780
fgenesh2_kg.4__1796__AT2G37430.1 Arabidopsis lyrata fgenesh2_kg.4__1796__AT2G37430.1 I 0.780
GLYMA02G10490 Glycine max GLYMA02G10490 I 0.780
GLYMA03G33050 Glycine max GLYMA03G33050 I 0.780
GLYMA03G33060 Glycine max GLYMA03G33060 I 0.780
GLYMA03G33070 Glycine max GLYMA03G33070 I 0.780
GLYMA10G05210 Glycine max GLYMA10G05210 I 0.780
GLYMA10G43630 Glycine max GLYMA10G43630 I 0.780
GLYMA13G19570 Glycine max GLYMA13G19570 I 0.780
GLYMA18G52410 Glycine max GLYMA18G52410 I 0.780
GLYMA19G35740 Glycine max GLYMA19G35740 I 0.780
GLYMA19G35770 Glycine max GLYMA19G35770 I 0.780
GLYMA20G23180 Glycine max GLYMA20G23180 I 0.780
GSMUA_Achr10G03700_001 Musa acuminata GSMUA_Achr10G03700_001 I 0.780
GSMUA_Achr10G13540_001 Musa acuminata GSMUA_Achr10G13540_001 I 0.780
GSMUA_Achr5G29140_001 Musa acuminata GSMUA_Achr5G29140_001 I 0.780
MTR_7g023560 Medicago truncatula MTR_7g023560 I 0.780
PGSC0003DMG400023518 Solanum tuberosum PGSC0003DMG400023518 I 0.780
PGSC0003DMG400023547 Solanum tuberosum PGSC0003DMG400023547 I 0.780
POPTR_0008s05110 Populus trichocarpa POPTR_0008s05110 I 0.780
POPTR_0010s21650 Populus trichocarpa POPTR_0010s21650 I 0.780
PRUPE_ppa022066mg Prunus persica PRUPE_ppa022066mg I 0.780
Solyc05g054650.1 Solanum lycopersicum Solyc05g054650.1 I 0.780
Solyc05g054660.1 Solanum lycopersicum Solyc05g054660.1 I 0.780
VIT_06s0004g04180 Vitis vinifera VIT_06s0004g04180 I 0.780
VIT_13s0019g00480 Vitis vinifera VIT_13s0019g00480 I 0.780
Cla004091 Citrullus lanatus Cla004091 I 0.780
Pm002762 Prunus mume Pm002762 I 0.780
29585.m000611 Ricinus communis 29585.m000611 I 0.780
cassava9455.m1 Manihot esculenta cassava9455.m1 I 0.780
Cucsa.165460 Cucumis sativus Cucsa.165460 I 0.780
mgf023249m Mimulus guttatus mgf023249m I 0.780
Aquca_010_00703 Aquilegia coerulea Aquca_010_00703 I 0.780
Aquca_027_00274 Aquilegia coerulea Aquca_027_00274 I 0.780
Bostr.23794s0343 Boechera stricta Bostr.23794s0343 I 0.780
Ciclev10013311m.g Citrus clementina Ciclev10013311m.g I 0.780
Eucgr.G02910 Eucalyptus grandis Eucgr.G02910 I 0.780
evm.TU.contig_30912.1 Carica papaya evm.TU.contig_30912.1 I 0.780
gene18204-v1.0-hybrid Fragaria vesca gene18204-v1.0-hybrid I 0.780
Gorai.006G176000 Gossypium raimondii Gorai.006G176000 I 0.780
Gorai.006G176100 Gossypium raimondii Gorai.006G176100 I 0.780
Gorai.011G254200 Gossypium raimondii Gorai.011G254200 I 0.780
Gorai.011G254300 Gossypium raimondii Gorai.011G254300 I 0.780
Gorai.013G023300 Gossypium raimondii Gorai.013G023300 I 0.780
Lus10030330.g Linum usitatissimum Lus10030330.g I 0.780
orange1.1g031966m.g Citrus sinensis orange1.1g031966m.g I 0.780
SapurV1A.0038s0750 Salix purpurea SapurV1A.0038s0750 I 0.780
SapurV1A.0095s0590 Salix purpurea SapurV1A.0095s0590 I 0.780
Thhalv10017303m.g Eutrema salsugineum Thhalv10017303m.g I 0.780
chr5.CM0180.20.nc Lotus japonicus chr5.CM0180.20.nc I 0.780
Bra005197 Brassica rapa Bra005197 I 0.779
MTR_7g100100 Medicago truncatula MTR_7g100100 I 0.779
28637.m000203 Ricinus communis 28637.m000203 I 0.779
cassava35212.m1 Manihot esculenta cassava35212.m1 I 0.779
cassava8924.m1 Manihot esculenta cassava8924.m1 I 0.779
Cagra.0666s0001 Capsella grandiflora Cagra.0666s0001 I 0.779
Carubv10024141m.g Capsella rubella Carubv10024141m.g I 0.779
29661.m000908 Ricinus communis 29661.m000908 I 0.777
ZAT1 Arabidopsis thaliana AT1G02030 D 0.776
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I 0.776
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.776
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.776
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.776
Eucgr.A01231 Eucalyptus grandis Eucgr.A01231 I 0.776
Thhalv10025912m.g Eutrema salsugineum Thhalv10025912m.g I 0.776
GSMUA_Achr6G15360_001 Musa acuminata GSMUA_Achr6G15360_001 I 0.775
PRUPE_ppa011762mg Prunus persica PRUPE_ppa011762mg I 0.775
TCM_022001 Theobroma cacao TCM_022001 I 0.775
Pm018761 Prunus mume Pm018761 I 0.775
gene26659-v1.0-hybrid Fragaria vesca gene26659-v1.0-hybrid I 0.775
Lus10024428.g Linum usitatissimum Lus10024428.g I 0.775
MDP0000137826 Malus domestica MDP0000137826 I 0.775
MDP0000257423 Malus domestica MDP0000257423 I 0.775
Bo4g030570 Brassica oleracea Bo4g030570 I 0.774
Bo4g186920 Brassica oleracea Bo4g186920 I 0.774
Bra017188 Brassica rapa Bra017188 I 0.774
GSMUA_Achr11G24480_001 Musa acuminata GSMUA_Achr11G24480_001 I 0.774
cassava39064.m1 Manihot esculenta cassava39064.m1 I 0.774
Ciclev10032889m.g Citrus clementina Ciclev10032889m.g I 0.774
Ciclev10032899m.g Citrus clementina Ciclev10032899m.g I 0.774
Ciclev10032922m.g Citrus clementina Ciclev10032922m.g I 0.774
Eucgr.A01230 Eucalyptus grandis Eucgr.A01230 I 0.774
orange1.1g040287m.g Citrus sinensis orange1.1g040287m.g I 0.774
orange1.1g041414m.g Citrus sinensis orange1.1g041414m.g I 0.774
orange1.1g044181m.g Citrus sinensis orange1.1g044181m.g I 0.774
PGSC0003DMG400030311 Solanum tuberosum PGSC0003DMG400030311 I 0.773
Si037343m.g Setaria italica Si037343m.g N 0.773
GSMUA_Achr11G02250_001 Musa acuminata GSMUA_Achr11G02250_001 I 0.771
GSMUA_Achr11G21920_001 Musa acuminata GSMUA_Achr11G21920_001 I 0.771
Cla018516 Citrullus lanatus Cla018516 I 0.771
Cucsa.065930 Cucumis sativus Cucsa.065930 I 0.771
GLYMA13G19550 Glycine max GLYMA13G19550 I 0.770
Eucgr.A01233 Eucalyptus grandis Eucgr.A01233 I 0.770
BGIOSGA000523 Oryza indica BGIOSGA000523 I 0.767
GRMZM5G804618 Zea mays GRMZM5G804618 I 0.767
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.767
LPERR01G31460 Leersia perrieri LPERR01G31460 I 0.767
OGLUM01G40470 Oryza glumaepatula OGLUM01G40470 I 0.767
OMERI01G33680 Oryza meridionalis OMERI01G33680 I 0.767
ONIVA01G41600 Oryza nivara ONIVA01G41600 I 0.767
ORGLA01G0304300 Oryza glaberrima ORGLA01G0304300 I 0.767
ORUFI01G40000 Oryza rufipogon ORUFI01G40000 I 0.767
OS01G0838600 Oryza sativa OS01G0838600 I 0.767
TRAES3BF117500110CFD_g Triticum aestivum TRAES3BF117500110CFD_g I 0.767
GLYMA10G05180 Glycine max GLYMA10G05180 I 0.766
GRMZM2G307402 Zea mays GRMZM2G307402 I 0.766
TCM_014903 Theobroma cacao TCM_014903 I 0.766
Gorai.001G049300 Gossypium raimondii Gorai.001G049300 I 0.766
BGIOSGA033523 Oryza indica BGIOSGA033523 N 0.765
BGIOSGA033525 Oryza indica BGIOSGA033525 N 0.765
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.765
OB11G27850 Oryza brachyantha OB11G27850 N 0.765
OS11G0702300 Oryza sativa OS11G0702300 N 0.765
PGSC0003DMG401030312 Solanum tuberosum PGSC0003DMG401030312 I 0.765
Sb10g031270 Sorghum bicolor Sb10g031270 I 0.765
Si008395m.g Setaria italica Si008395m.g I 0.765
Si010615m.g Setaria italica Si010615m.g I 0.765
Solyc06g075780.1 Solanum lycopersicum Solyc06g075780.1 I 0.765
Pavir.J04850 Panicum virgatum Pavir.J04850 I 0.765
PGSC0003DMG400039582 Solanum tuberosum PGSC0003DMG400039582 I 0.763
GSMUA_Achr1G03310_001 Musa acuminata GSMUA_Achr1G03310_001 I 0.762
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.762
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.761
30170.m013751 Ricinus communis 30170.m013751 I 0.761
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.760
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.760
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.760
AZF2 Arabidopsis thaliana AT3G19580 D 0.759
BGIOSGA010469 Oryza indica BGIOSGA010469 N 0.759
BGIOSGA010470 Oryza indica BGIOSGA010470 N 0.759
Bo1g113530 Brassica oleracea Bo1g113530 I 0.759
Bo5g113850 Brassica oleracea Bo5g113850 I 0.759
Bra022436 Brassica rapa Bra022436 I 0.759
Bra038219 Brassica rapa Bra038219 I 0.759
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N 0.759
F775_12743 Aegilops tauschii F775_12743 N 0.759
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.759
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.759
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.759
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.759
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.759
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.759
GRMZM5G883760 Zea mays GRMZM5G883760 N 0.759
LPERR03G19190 Leersia perrieri LPERR03G19190 N 0.759
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.759
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.759
OB03G31790 Oryza brachyantha OB03G31790 N 0.759
OBART03G22560 Oryza barthii OBART03G22560 N 0.759
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N 0.759
OPUNC03G21190 Oryza punctata OPUNC03G21190 N 0.759
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N 0.759
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N 0.759
OS03G0437100 Oryza sativa OS03G0437100 N 0.759
OS11G0340477 Oryza sativa OS11G0340477 N 0.759
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.759
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.759
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.759
Si003051m.g Setaria italica Si003051m.g I 0.759
Si037516m.g Setaria italica Si037516m.g N 0.759
TCM_007214 Theobroma cacao TCM_007214 I 0.759
TCM_034720 Theobroma cacao TCM_034720 I 0.759
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N 0.759
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N 0.759
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.759
Ca_01586 Cicer arietinum Ca_01586 I 0.759
Ca_05641 Cicer arietinum Ca_05641 I 0.759
Ca_18364 Cicer arietinum Ca_18364 I 0.759
Pm005390 Prunus mume Pm005390 I 0.759
Pm021284 Prunus mume Pm021284 I 0.759
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.759
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.759
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.759
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.759
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.759
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.759
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.759
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.759
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.759
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.759
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.759
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.759
MDP0000198015 Malus domestica MDP0000198015 I 0.759
MDP0000319225 Malus domestica MDP0000319225 I 0.759
MDP0000573176 Malus domestica MDP0000573176 I 0.759
MDP0000762756 Malus domestica MDP0000762756 I 0.759
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.759
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.759
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.759
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.759
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.759
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.759
PK10188.1 Cannabis sativa PK10188.1 I 0.759
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.759
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.759
BGIOSGA004768 Oryza indica BGIOSGA004768 I 0.758
BRADI2G54500 Brachypodium distachyon BRADI2G54500 I 0.758
GRMZM2G112799 Zea mays GRMZM2G112799 I 0.758
GRMZM2G376061 Zea mays GRMZM2G376061 I 0.758
LPERR01G31500 Leersia perrieri LPERR01G31500 I 0.758
OGLUM01G40530 Oryza glumaepatula OGLUM01G40530 I 0.758
OMERI01G33710 Oryza meridionalis OMERI01G33710 I 0.758
ONIVA01G41740 Oryza nivara ONIVA01G41740 I 0.758
OPUNC01G35440 Oryza punctata OPUNC01G35440 I 0.758
OPUNC01G35470 Oryza punctata OPUNC01G35470 I 0.758
ORGLA01G0304700 Oryza glaberrima ORGLA01G0304700 I 0.758
OS01G0839100 Oryza sativa OS01G0839100 I 0.758
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I 0.758
Sb03g039270 Sorghum bicolor Sb03g039270 I 0.758
TRAES3BF127400030CFD_g Triticum aestivum TRAES3BF127400030CFD_g I 0.758
cassava15802.m1 Manihot esculenta cassava15802.m1 I 0.758
Pavir.Eb03660 Panicum virgatum Pavir.Eb03660 I 0.758
Pavir.J14338 Panicum virgatum Pavir.J14338 I 0.758
AT5G03510 Arabidopsis thaliana AT5G03510 D 0.757
BGIOSGA010987 Oryza indica BGIOSGA010987 I 0.756
Bo00576s170 Brassica oleracea Bo00576s170 I 0.756
Bra003148 Brassica rapa Bra003148 I 0.756
Bra039806 Brassica rapa Bra039806 I 0.756
GRMZM2G048154 Zea mays GRMZM2G048154 I 0.756
GRMZM2G112251 Zea mays GRMZM2G112251 I 0.756
GSMUA_Achr9G03210_001 Musa acuminata GSMUA_Achr9G03210_001 I 0.756
LPERR03G11200 Leersia perrieri LPERR03G11200 I 0.756
MTR_1g067640 Medicago truncatula MTR_1g067640 I 0.756
MTR_1g067650 Medicago truncatula MTR_1g067650 I 0.756
OGLUM03G12700 Oryza glumaepatula OGLUM03G12700 I 0.756
OMERI03G11850 Oryza meridionalis OMERI03G11850 I 0.756
ONIVA01G18540 Oryza nivara ONIVA01G18540 I 0.756
OPUNC03G12220 Oryza punctata OPUNC03G12220 I 0.756
ORGLA03G0122200 Oryza glaberrima ORGLA03G0122200 I 0.756
ORUFI03G13310 Oryza rufipogon ORUFI03G13310 I 0.756
ORUFI04G17060 Oryza rufipogon ORUFI04G17060 N 0.756
OS03G0279700 Oryza sativa OS03G0279700 I 0.756
Si037660m.g Setaria italica Si037660m.g I 0.756
Traes_4AS_D4763E468 Triticum aestivum Traes_4AS_D4763E468 I 0.756
Cla013490 Citrullus lanatus Cla013490 I 0.756
29154.m000218 Ricinus communis 29154.m000218 I 0.756
cassava16287.m1 Manihot esculenta cassava16287.m1 I 0.756
cassava42054.valid.m1 Manihot esculenta cassava42054.valid.m1 I 0.756
Cucsa.379890 Cucumis sativus Cucsa.379890 I 0.756
Aquca_010_00704 Aquilegia coerulea Aquca_010_00704 I 0.756
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.756
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.756
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.756
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.756
Eucgr.B02390 Eucalyptus grandis Eucgr.B02390 I 0.756
Eucgr.B02391 Eucalyptus grandis Eucgr.B02391 I 0.756
Eucgr.B02392 Eucalyptus grandis Eucgr.B02392 I 0.756
Eucgr.B02394 Eucalyptus grandis Eucgr.B02394 I 0.756
Eucgr.B02395 Eucalyptus grandis Eucgr.B02395 I 0.756
evm.TU.supercontig_163.32 Carica papaya evm.TU.supercontig_163.32 I 0.756
evm.TU.supercontig_190.30 Carica papaya evm.TU.supercontig_190.30 I 0.756
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.756
MDP0000237150 Malus domestica MDP0000237150 I 0.756
Pavir.Ia03651 Panicum virgatum Pavir.Ia03651 I 0.756
Pavir.Ib01297 Panicum virgatum Pavir.Ib01297 I 0.756
PK27255.1 Cannabis sativa PK27255.1 I 0.756
LjSGA_020980.2 Lotus japonicus LjSGA_020980.2 I 0.756