Thhalv10025912m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10025912m.g T143580_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.758 0.674
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.758 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10025912m C2H2 ZF 164 186
Thhalv10025912m C2H2 ZF 225 247

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_700593.1 Arabidopsis lyrata scaffold_700593.1 I 0.818
Bra017706 Brassica rapa Bra017706 I 0.818
Bostr.7867s1389 Boechera stricta Bostr.7867s1389 I 0.818
ZAT3 Arabidopsis thaliana AT4G35280 I 0.818
Bo7g117320 Brassica oleracea Bo7g117320 I 0.811
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I 0.811
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.776
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I 0.768
Bra011601 Brassica rapa Bra011601 N 0.768
Bo1g006590 Brassica oleracea Bo1g006590 N 0.768
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.759
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.759
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.759
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.759
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.759
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.759
ZAT11 Arabidopsis thaliana AT2G37430 I 0.759
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.758
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.758
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.758
Bo00576s170 Brassica oleracea Bo00576s170 I 0.758
Bra039806 Brassica rapa Bra039806 I 0.758
MDP0000237150 Malus domestica MDP0000237150 I 0.758
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.758
Bra003148 Brassica rapa Bra003148 I 0.758
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.758
ORUFI04G17060 Oryza rufipogon ORUFI04G17060 N 0.757