Bra017706 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra017706 T081920_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.768 0.696
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.768 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra017706.1-P C2H2 ZF 165 187
Bra017706.1-P C2H2 ZF 230 252

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT3 Arabidopsis thaliana AT4G35280 I 0.827
scaffold_700593.1 Arabidopsis lyrata scaffold_700593.1 I 0.827
Bostr.7867s1389 Boechera stricta Bostr.7867s1389 I 0.827
Bo7g117320 Brassica oleracea Bo7g117320 I 0.821
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I 0.821
Thhalv10025912m.g Eutrema salsugineum Thhalv10025912m.g I 0.818
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.786
Bra011601 Brassica rapa Bra011601 N 0.778
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I 0.777
ZAT11 Arabidopsis thaliana AT2G37430 I 0.769
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.769
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.769
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.769
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.769
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.769
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.769
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.768
Bo00576s170 Brassica oleracea Bo00576s170 I 0.768
Bo1g006590 Brassica oleracea Bo1g006590 N 0.768
Bra003148 Brassica rapa Bra003148 I 0.768
Bra039806 Brassica rapa Bra039806 I 0.768
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.768
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.768
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.768
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.768
MDP0000237150 Malus domestica MDP0000237150 I 0.768
Bo6g067580 Brassica oleracea Bo6g067580 I 0.762
Bra030981 Brassica rapa Bra030981 I 0.762
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.762
BGIOSGA033523 Oryza indica BGIOSGA033523 N 0.758
BGIOSGA033525 Oryza indica BGIOSGA033525 N 0.758
OB11G27850 Oryza brachyantha OB11G27850 N 0.758
OS11G0702300 Oryza sativa OS11G0702300 N 0.758
ORUFI04G17060 Oryza rufipogon ORUFI04G17060 N 0.757