MTR_1g018420 (Medicago truncatula)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MTR_1g018420 T123764_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.821 0.870
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.802 0.891
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.800 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.800 0.717
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.795 0.848
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.795 0.848
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.795 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.786 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.786 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES59347 C2H2 ZF 81 103
AES59347 C2H2 ZF 137 159

Links

Other C2H2 ZF family TFs
Other Medicago truncatula TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.827
Bo1g113530 Brassica oleracea Bo1g113530 I 0.826
Bo5g113850 Brassica oleracea Bo5g113850 I 0.826
Bra022436 Brassica rapa Bra022436 I 0.826
Bra038219 Brassica rapa Bra038219 I 0.826
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.826
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.826
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.826
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.826
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.826
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.826
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.826
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.826
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.826
TCM_007214 Theobroma cacao TCM_007214 I 0.826
TCM_034720 Theobroma cacao TCM_034720 I 0.826
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.826
Ca_01586 Cicer arietinum Ca_01586 I 0.826
Ca_18364 Cicer arietinum Ca_18364 I 0.826
Pm005390 Prunus mume Pm005390 I 0.826
Pm021284 Prunus mume Pm021284 I 0.826
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.826
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.826
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.826
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.826
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.826
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.826
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.826
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.826
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.826
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.826
MDP0000198015 Malus domestica MDP0000198015 I 0.826
MDP0000319225 Malus domestica MDP0000319225 I 0.826
MDP0000573176 Malus domestica MDP0000573176 I 0.826
MDP0000762756 Malus domestica MDP0000762756 I 0.826
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.826
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.826
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.826
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.826
PK10188.1 Cannabis sativa PK10188.1 I 0.826
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.826
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.826
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.825
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.822
AZF2 Arabidopsis thaliana AT3G19580 D 0.821
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.821
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.821
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.821
30170.m013751 Ricinus communis 30170.m013751 I 0.819
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.817
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.817
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.817
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.817
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.812
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.811
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.811
28152.m000908 Ricinus communis 28152.m000908 I 0.811
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.811
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.810
mgf006006m Mimulus guttatus mgf006006m I 0.810
ZAT6 Arabidopsis thaliana AT5G04340 D 0.802
Bo9g181170 Brassica oleracea Bo9g181170 I 0.802
Bra009464 Brassica rapa Bra009464 I 0.802
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.802
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.802
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.802
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.802
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.802
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.802
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.802
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.802
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.802
Bo7g048650 Brassica oleracea Bo7g048650 I 0.801
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.801
ZAT4 Arabidopsis thaliana AT2G45120 D 0.800
ZAT9 Arabidopsis thaliana AT3G60580 D 0.800
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.800
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.800
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.800
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.800
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.800
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.800
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.800
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.800
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.800
Bo7g065200 Brassica oleracea Bo7g065200 I 0.797
Bra033666 Brassica rapa Bra033666 I 0.797
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.797
Ca_05641 Cicer arietinum Ca_05641 I 0.797
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.797
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.797
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.797
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.796
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.796
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.796
ZAT10 Arabidopsis thaliana AT1G27730 D 0.795
Bo3g142840 Brassica oleracea Bo3g142840 I 0.795
Bra010922 Brassica rapa Bra010922 I 0.795
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.795
TCM_000780 Theobroma cacao TCM_000780 I 0.795
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.794
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.794
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.794
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.794
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.794
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.794
Ca_23672 Cicer arietinum Ca_23672 I 0.794
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.794
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.794
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.794
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.794
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.794
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.794
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.794
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.793
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.793
AZF3 Arabidopsis thaliana AT5G43170 I 0.791
Bo1g081350 Brassica oleracea Bo1g081350 I 0.791
Bra012914 Brassica rapa Bra012914 I 0.791
Bra029985 Brassica rapa Bra029985 I 0.791
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.791
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.791
OS12G0583700 Oryza sativa OS12G0583700 I 0.791
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.791
Si023013m.g Setaria italica Si023013m.g I 0.791
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.791
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.789
Bra018817 Brassica rapa Bra018817 I 0.788
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.787
AZF1 Arabidopsis thaliana AT5G67450 D 0.786
Bo2g168030 Brassica oleracea Bo2g168030 I 0.786
Bo9g019120 Brassica oleracea Bo9g019120 I 0.786
Bra031834 Brassica rapa Bra031834 I 0.786
Bra037845 Brassica rapa Bra037845 I 0.786
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.786
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.786
29661.m000908 Ricinus communis 29661.m000908 I 0.786
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.786
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.785
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.784
OB03G42170 Oryza brachyantha OB03G42170 I 0.783
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.782
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.781
Bo5g052290 Brassica oleracea Bo5g052290 I 0.777
Bra032845 Brassica rapa Bra032845 I 0.777
Bo3g037560 Brassica oleracea Bo3g037560 I 0.776
Bo4g104940 Brassica oleracea Bo4g104940 I 0.776
Bo4g195370 Brassica oleracea Bo4g195370 I 0.776
Bo6g077190 Brassica oleracea Bo6g077190 I 0.776
Bo8g095300 Brassica oleracea Bo8g095300 I 0.776
Bra000372 Brassica rapa Bra000372 I 0.776
Bra003422 Brassica rapa Bra003422 I 0.776
Bra007545 Brassica rapa Bra007545 I 0.776
Bra014483 Brassica rapa Bra014483 I 0.776
Bra040325 Brassica rapa Bra040325 I 0.776
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.776
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.776
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.776
ZAT1 Arabidopsis thaliana AT1G02030 D 0.775
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.775
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.775
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.775
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.775
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.774
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.773
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.773
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.770
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.770
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.770
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.770
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.770
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.770
OB04G28040 Oryza brachyantha OB04G28040 I 0.770
OBART04G21020 Oryza barthii OBART04G21020 I 0.770
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.770
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.770
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.770
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.770
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.770
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.770
OS04G0552700 Oryza sativa OS04G0552700 I 0.770
Si010615m.g Setaria italica Si010615m.g I 0.770
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.770
30174.m008818 Ricinus communis 30174.m008818 I 0.770
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.770
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.770
mgf017082m Mimulus guttatus mgf017082m I 0.770
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.770
mgf021094m Mimulus guttatus mgf021094m I 0.769
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.769
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.769
Cla001400 Citrullus lanatus Cla001400 I 0.765
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.764
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.764
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.764
mgf021789m Mimulus guttatus mgf021789m I 0.764
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.763
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.761
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.760
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.760
OBART02G26700 Oryza barthii OBART02G26700 I 0.760
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.760
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.760
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.760
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.760
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.760
OS02G0659500 Oryza sativa OS02G0659500 I 0.760
Cla022966 Citrullus lanatus Cla022966 I 0.760
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.760
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.760
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.759
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.759
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.759
OB03G31780 Oryza brachyantha OB03G31780 I 0.759
OBART03G22570 Oryza barthii OBART03G22570 I 0.759
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.759
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.759
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.759
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.759
OS03G0437200 Oryza sativa OS03G0437200 I 0.759
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.759
30147.m014242 Ricinus communis 30147.m014242 I 0.759
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.759
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.759
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.758
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.758
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.758
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.758
Si037343m.g Setaria italica Si037343m.g N 0.757
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.756