PGSC0003DMG400002383 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400002383 T125795_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.807 0.826
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.788 0.804
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.787 0.783
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.787 0.783
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.787 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.674
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.772 0.739
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.772 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400006126 C2H2 ZF 98 120
PGSC0003DMT400006126 C2H2 ZF 158 180

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.822
Bo1g113530 Brassica oleracea Bo1g113530 I 0.812
Bo5g113850 Brassica oleracea Bo5g113850 I 0.812
Bra022436 Brassica rapa Bra022436 I 0.812
Bra038219 Brassica rapa Bra038219 I 0.812
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.812
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.812
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.812
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.812
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.812
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.812
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.812
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.812
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.812
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.812
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.812
TCM_007214 Theobroma cacao TCM_007214 I 0.812
TCM_034720 Theobroma cacao TCM_034720 I 0.812
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.812
Ca_01586 Cicer arietinum Ca_01586 I 0.812
Ca_18364 Cicer arietinum Ca_18364 I 0.812
Pm005390 Prunus mume Pm005390 I 0.812
Pm021284 Prunus mume Pm021284 I 0.812
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.812
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.812
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.812
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.812
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.812
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.812
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.812
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.812
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.812
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.812
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.812
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.812
MDP0000198015 Malus domestica MDP0000198015 I 0.812
MDP0000319225 Malus domestica MDP0000319225 I 0.812
MDP0000573176 Malus domestica MDP0000573176 I 0.812
MDP0000762756 Malus domestica MDP0000762756 I 0.812
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.812
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.812
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.812
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.812
PK10188.1 Cannabis sativa PK10188.1 I 0.812
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.812
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.812
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.811
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.811
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.811
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.811
mgf006006m Mimulus guttatus mgf006006m I 0.811
AZF2 Arabidopsis thaliana AT3G19580 D 0.807
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.807
28152.m000908 Ricinus communis 28152.m000908 I 0.807
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.807
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.807
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.807
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.806
30170.m013751 Ricinus communis 30170.m013751 I 0.806
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.806
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.802
ZAT4 Arabidopsis thaliana AT2G45120 D 0.799
ZAT9 Arabidopsis thaliana AT3G60580 D 0.799
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.799
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.799
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.799
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.799
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.799
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.799
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.799
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.799
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.799
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.794
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.793
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.793
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.793
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.793
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.793
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.793
Ca_23672 Cicer arietinum Ca_23672 I 0.793
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.793
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.793
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.793
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.793
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.793
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.793
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.792
ZAT6 Arabidopsis thaliana AT5G04340 D 0.788
Bo9g181170 Brassica oleracea Bo9g181170 I 0.788
Bra009464 Brassica rapa Bra009464 I 0.788
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.788
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.788
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.788
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.788
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.788
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.788
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.788
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.788
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.788
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.788
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.788
ZAT10 Arabidopsis thaliana AT1G27730 D 0.787
Bo3g142840 Brassica oleracea Bo3g142840 I 0.787
Bo7g048650 Brassica oleracea Bo7g048650 I 0.787
Bra010922 Brassica rapa Bra010922 I 0.787
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.787
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.787
Bo7g065200 Brassica oleracea Bo7g065200 I 0.783
Bra033666 Brassica rapa Bra033666 I 0.783
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.783
Ca_05641 Cicer arietinum Ca_05641 I 0.783
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.783
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.783
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.783
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.783
Bra018817 Brassica rapa Bra018817 I 0.782
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.782
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.782
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.782
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.782
OS12G0583700 Oryza sativa OS12G0583700 I 0.782
Si023013m.g Setaria italica Si023013m.g I 0.782
TCM_000780 Theobroma cacao TCM_000780 I 0.782
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.782
29661.m000908 Ricinus communis 29661.m000908 I 0.780
OB03G42170 Oryza brachyantha OB03G42170 I 0.779
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.779
AZF3 Arabidopsis thaliana AT5G43170 I 0.777
Bo1g081350 Brassica oleracea Bo1g081350 I 0.777
Bra012914 Brassica rapa Bra012914 I 0.777
Bra029985 Brassica rapa Bra029985 I 0.777
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.777
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.777
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.776
ZAT1 Arabidopsis thaliana AT1G02030 D 0.776
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.776
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.776
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.776
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.776
Bo3g037560 Brassica oleracea Bo3g037560 I 0.775
Bo4g104940 Brassica oleracea Bo4g104940 I 0.775
Bo4g195370 Brassica oleracea Bo4g195370 I 0.775
Bo6g077190 Brassica oleracea Bo6g077190 I 0.775
Bo8g095300 Brassica oleracea Bo8g095300 I 0.775
Bra000372 Brassica rapa Bra000372 I 0.775
Bra003422 Brassica rapa Bra003422 I 0.775
Bra007545 Brassica rapa Bra007545 I 0.775
Bra014483 Brassica rapa Bra014483 I 0.775
Bra040325 Brassica rapa Bra040325 I 0.775
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.775
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.775
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.775
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.773
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.773
AZF1 Arabidopsis thaliana AT5G67450 D 0.772
Bo2g168030 Brassica oleracea Bo2g168030 I 0.772
Bo9g019120 Brassica oleracea Bo9g019120 I 0.772
Bra031834 Brassica rapa Bra031834 I 0.772
Bra037845 Brassica rapa Bra037845 I 0.772
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.772
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.771
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.770
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.769
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.769
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.769
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.769
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.769
OB04G28040 Oryza brachyantha OB04G28040 I 0.769
OBART04G21020 Oryza barthii OBART04G21020 I 0.769
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.769
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.769
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.769
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.769
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.769
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.769
OS04G0552700 Oryza sativa OS04G0552700 I 0.769
Si010615m.g Setaria italica Si010615m.g I 0.769
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.769
30174.m008818 Ricinus communis 30174.m008818 I 0.769
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.769
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.769
mgf017082m Mimulus guttatus mgf017082m I 0.769
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.769
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.768
mgf021094m Mimulus guttatus mgf021094m I 0.768
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.768
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.768
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.768
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.768
mgf021789m Mimulus guttatus mgf021789m I 0.765
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.764
Bo5g052290 Brassica oleracea Bo5g052290 I 0.763
Bra032845 Brassica rapa Bra032845 I 0.763
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.762
Cla022966 Citrullus lanatus Cla022966 I 0.761
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.761
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.760
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.760
30147.m014242 Ricinus communis 30147.m014242 I 0.760
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.760
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.760
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.759
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.759
OBART02G26700 Oryza barthii OBART02G26700 I 0.759
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.759
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.759
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.759
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.759
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.759
OS02G0659500 Oryza sativa OS02G0659500 I 0.759
Cla001400 Citrullus lanatus Cla001400 I 0.759
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.759
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.759
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.759
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.759
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.758
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.758