Cucsa.219210 (Cucumis sativus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cucsa.219210 T137927_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.770 0.826
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.765 0.804
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.758 0.783
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.758 0.783
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.758 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.219210.1 C2H2 ZF 93 115
Cucsa.219210.1 C2H2 ZF 145 167

Links

Other C2H2 ZF family TFs
Other Cucumis sativus TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.788
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.788
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.788
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.781
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.780
Bo3g037560 Brassica oleracea Bo3g037560 I 0.775
Bo4g195370 Brassica oleracea Bo4g195370 I 0.775
Bra000372 Brassica rapa Bra000372 I 0.775
Bra040325 Brassica rapa Bra040325 I 0.775
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.775
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.774
28152.m000908 Ricinus communis 28152.m000908 I 0.774
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.774
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.774
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.774
Bra018817 Brassica rapa Bra018817 I 0.773
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.773
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.773
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.773
29661.m000908 Ricinus communis 29661.m000908 I 0.771
AZF2 Arabidopsis thaliana AT3G19580 D 0.770
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.770
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.769
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.769
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.769
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.769
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.768
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.768
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.768
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.767
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.766
ZAT6 Arabidopsis thaliana AT5G04340 D 0.765
Bo1g113530 Brassica oleracea Bo1g113530 I 0.765
Bo5g113850 Brassica oleracea Bo5g113850 I 0.765
Bo7g065200 Brassica oleracea Bo7g065200 I 0.765
Bo9g181170 Brassica oleracea Bo9g181170 I 0.765
Bra009464 Brassica rapa Bra009464 I 0.765
Bra022436 Brassica rapa Bra022436 I 0.765
Bra033666 Brassica rapa Bra033666 I 0.765
Bra038219 Brassica rapa Bra038219 I 0.765
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.765
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.765
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.765
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.765
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.765
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.765
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.765
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.765
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.765
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.765
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.765
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.765
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.765
TCM_007214 Theobroma cacao TCM_007214 I 0.765
TCM_034720 Theobroma cacao TCM_034720 I 0.765
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.765
Ca_01586 Cicer arietinum Ca_01586 I 0.765
Ca_05641 Cicer arietinum Ca_05641 I 0.765
Ca_18364 Cicer arietinum Ca_18364 I 0.765
Pm005390 Prunus mume Pm005390 I 0.765
Pm021284 Prunus mume Pm021284 I 0.765
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.765
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.765
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.765
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.765
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.765
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.765
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.765
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.765
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.765
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.765
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.765
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.765
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.765
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.765
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.765
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.765
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.765
MDP0000198015 Malus domestica MDP0000198015 I 0.765
MDP0000319225 Malus domestica MDP0000319225 I 0.765
MDP0000573176 Malus domestica MDP0000573176 I 0.765
MDP0000762756 Malus domestica MDP0000762756 I 0.765
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.765
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.765
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.765
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.765
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.765
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.765
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.765
PK10188.1 Cannabis sativa PK10188.1 I 0.765
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.765
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.765
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.764
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.764
Bo5g052290 Brassica oleracea Bo5g052290 I 0.763
Bo7g048650 Brassica oleracea Bo7g048650 I 0.763
Bra032845 Brassica rapa Bra032845 I 0.763
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.763
TCM_000780 Theobroma cacao TCM_000780 I 0.763
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.763
30170.m013751 Ricinus communis 30170.m013751 I 0.763
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.763
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.762
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.760
POPTR_0001s24250 Populus trichocarpa POPTR_0001s24250 I 0.760
POPTR_0009s03280 Populus trichocarpa POPTR_0009s03280 I 0.760
POPTR_1833s00200 Populus trichocarpa POPTR_1833s00200 I 0.760
GSMUA_Achr9G03210_001 Musa acuminata GSMUA_Achr9G03210_001 I 0.759
MTR_1g067640 Medicago truncatula MTR_1g067640 I 0.759
MTR_1g067650 Medicago truncatula MTR_1g067650 I 0.759
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.759
SapurV1A.0040s0050 Salix purpurea SapurV1A.0040s0050 I 0.759
SapurV1A.4260s0020 Salix purpurea SapurV1A.4260s0020 I 0.759
ZAT10 Arabidopsis thaliana AT1G27730 D 0.758
AZF3 Arabidopsis thaliana AT5G43170 I 0.758
Bo3g142840 Brassica oleracea Bo3g142840 I 0.758
Bra010922 Brassica rapa Bra010922 I 0.758
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.758
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.758
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.758
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.758
mgf006006m Mimulus guttatus mgf006006m I 0.758
Sb02g038000 Sorghum bicolor Sb02g038000 N 0.757
Traes_2BS_DD07C2EE6 Triticum aestivum Traes_2BS_DD07C2EE6 N 0.757
Pavir.J15304 Panicum virgatum Pavir.J15304 N 0.757
Pavir.J16973 Panicum virgatum Pavir.J16973 N 0.757
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.756