TCM_000780 (Theobroma cacao)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 TCM_000780 T130164_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.817 0.870
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.817 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.796 0.848
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.796 0.826
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.793 0.804
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.793 0.804
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.793 0.804
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.776 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX91662 C2H2 ZF 78 100
EOX91662 C2H2 ZF 143 165

Links

Other C2H2 ZF family TFs
Other Theobroma cacao TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g019120 Brassica oleracea Bo9g019120 I 0.817
AZF1 Arabidopsis thaliana AT5G67450 D 0.817
Bo2g168030 Brassica oleracea Bo2g168030 I 0.817
Bra031834 Brassica rapa Bra031834 I 0.817
Bra037845 Brassica rapa Bra037845 I 0.817
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.812
30170.m013751 Ricinus communis 30170.m013751 I 0.803
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.802
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.802
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.802
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.802
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.802
Bo7g048650 Brassica oleracea Bo7g048650 I 0.798
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.798
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.798
Pm005390 Prunus mume Pm005390 I 0.796
Ca_18364 Cicer arietinum Ca_18364 I 0.796
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.796
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.796
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.796
Ca_01586 Cicer arietinum Ca_01586 I 0.796
Pm021284 Prunus mume Pm021284 I 0.796
TCM_034720 Theobroma cacao TCM_034720 I 0.796
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.796
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.796
PK10188.1 Cannabis sativa PK10188.1 I 0.796
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.796
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.796
TCM_007214 Theobroma cacao TCM_007214 I 0.796
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.796
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.796
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.796
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.796
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.796
MDP0000762756 Malus domestica MDP0000762756 I 0.796
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.796
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.796
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.796
MDP0000573176 Malus domestica MDP0000573176 I 0.796
MDP0000198015 Malus domestica MDP0000198015 I 0.796
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.796
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.796
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.796
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.796
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.796
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.796
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.796
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.796
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.796
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.796
MDP0000319225 Malus domestica MDP0000319225 I 0.796
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.796
AZF2 Arabidopsis thaliana AT3G19580 D 0.796
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.796
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.796
ZAT6 Arabidopsis thaliana AT5G04340 D 0.796
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.796
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.796
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.796
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.796
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.796
Bra038219 Brassica rapa Bra038219 I 0.796
Bra033666 Brassica rapa Bra033666 I 0.796
Bo5g113850 Brassica oleracea Bo5g113850 I 0.796
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.796
Bo1g113530 Brassica oleracea Bo1g113530 I 0.796
Bo9g181170 Brassica oleracea Bo9g181170 I 0.796
Bo7g065200 Brassica oleracea Bo7g065200 I 0.796
Bra022436 Brassica rapa Bra022436 I 0.796
Bra009464 Brassica rapa Bra009464 I 0.796
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.795
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.795
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.795
Bra010922 Brassica rapa Bra010922 I 0.793
Bo3g142840 Brassica oleracea Bo3g142840 I 0.793
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.793
ZAT10 Arabidopsis thaliana AT1G27730 D 0.793
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.792
28152.m000908 Ricinus communis 28152.m000908 I 0.792
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.792
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.791
AZF3 Arabidopsis thaliana AT5G43170 I 0.790
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.790
Bra012914 Brassica rapa Bra012914 I 0.788
Bra029985 Brassica rapa Bra029985 I 0.788
Bo1g081350 Brassica oleracea Bo1g081350 I 0.788
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.788
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.787
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.787
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.787
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.787
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.786
Bra018817 Brassica rapa Bra018817 I 0.786
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.786
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.783
mgf006006m Mimulus guttatus mgf006006m I 0.783
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.782
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.782
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.778
Ca_05641 Cicer arietinum Ca_05641 I 0.778
OB03G42170 Oryza brachyantha OB03G42170 I 0.777
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.776
Bo4g195370 Brassica oleracea Bo4g195370 I 0.776
Bo3g037560 Brassica oleracea Bo3g037560 I 0.776
ZAT9 Arabidopsis thaliana AT3G60580 D 0.776
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.776
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.776
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.776
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.776
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.776
Bra000372 Brassica rapa Bra000372 I 0.776
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.776
Bra040325 Brassica rapa Bra040325 I 0.776
ZAT4 Arabidopsis thaliana AT2G45120 D 0.776
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.776
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.776
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.776
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.775
Bra032845 Brassica rapa Bra032845 I 0.774
Bo5g052290 Brassica oleracea Bo5g052290 I 0.774
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.773
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.772
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.772
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.771
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.770
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.770
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.770
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.770
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.770
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.770
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.770
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.770
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.770
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.770
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.770
Ca_23672 Cicer arietinum Ca_23672 I 0.770
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.770
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.769
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.766
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.766
Cla001400 Citrullus lanatus Cla001400 I 0.766
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.766
29661.m000908 Ricinus communis 29661.m000908 I 0.763
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.763
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.762
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.762
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.762
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.762
OB03G31780 Oryza brachyantha OB03G31780 I 0.762
OBART03G22570 Oryza barthii OBART03G22570 I 0.762
OS03G0437200 Oryza sativa OS03G0437200 I 0.762
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.762
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.762
30147.m014242 Ricinus communis 30147.m014242 I 0.761
OS12G0583700 Oryza sativa OS12G0583700 I 0.761
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.761
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.761
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.761
Si023013m.g Setaria italica Si023013m.g I 0.761
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.761
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.760
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.760
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.760
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.760
Cla022966 Citrullus lanatus Cla022966 I 0.760
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.760
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.758
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.758
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.757
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.757
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.757
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.757
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.757
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.757