Lus10015888.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10015888.g T143113_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.800 0.804
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.800 0.783
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.783 0.674
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.761
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.760 0.652
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.760 0.652
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.760 0.652
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.759 0.630
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10015888 C2H2 ZF 135 157
Lus10015888 C2H2 ZF 177 199

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.806
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.806
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.805
ZAT4 Arabidopsis thaliana AT2G45120 D 0.800
ZAT9 Arabidopsis thaliana AT3G60580 D 0.800
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.800
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.800
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.800
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.800
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.800
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.800
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.800
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.800
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.800
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.800
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.800
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.800
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.799
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.790
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.790
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.790
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.790
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.790
Ca_23672 Cicer arietinum Ca_23672 I 0.790
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.790
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.790
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.784
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.784
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.784
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.784
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.784
30170.m013751 Ricinus communis 30170.m013751 I 0.784
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.784
mgf006006m Mimulus guttatus mgf006006m I 0.784
AZF2 Arabidopsis thaliana AT3G19580 D 0.783
Bo1g113530 Brassica oleracea Bo1g113530 I 0.783
Bo5g113850 Brassica oleracea Bo5g113850 I 0.783
Bra022436 Brassica rapa Bra022436 I 0.783
Bra038219 Brassica rapa Bra038219 I 0.783
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.783
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.783
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.783
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.783
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.783
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.783
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.783
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.783
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.783
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.783
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.783
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.783
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.783
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.783
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.783
TCM_007214 Theobroma cacao TCM_007214 I 0.783
TCM_034720 Theobroma cacao TCM_034720 I 0.783
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.783
Ca_01586 Cicer arietinum Ca_01586 I 0.783
Ca_18364 Cicer arietinum Ca_18364 I 0.783
Pm005390 Prunus mume Pm005390 I 0.783
Pm021284 Prunus mume Pm021284 I 0.783
28152.m000908 Ricinus communis 28152.m000908 I 0.783
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.783
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.783
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.783
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.783
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.783
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.783
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.783
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.783
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.783
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.783
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.783
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.783
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.783
MDP0000198015 Malus domestica MDP0000198015 I 0.783
MDP0000319225 Malus domestica MDP0000319225 I 0.783
MDP0000573176 Malus domestica MDP0000573176 I 0.783
MDP0000762756 Malus domestica MDP0000762756 I 0.783
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.783
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.783
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.783
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.783
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.783
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.783
PK10188.1 Cannabis sativa PK10188.1 I 0.783
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.783
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.783
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.782
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.782
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.782
OBART02G26700 Oryza barthii OBART02G26700 I 0.782
OBART04G21020 Oryza barthii OBART04G21020 I 0.782
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.782
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.782
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.782
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.782
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.782
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.782
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.782
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.782
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.782
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.782
OS02G0659500 Oryza sativa OS02G0659500 I 0.782
OS04G0552700 Oryza sativa OS04G0552700 I 0.782
Si010615m.g Setaria italica Si010615m.g I 0.782
30174.m008818 Ricinus communis 30174.m008818 I 0.782
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.782
Bo3g037560 Brassica oleracea Bo3g037560 I 0.776
Bo4g104940 Brassica oleracea Bo4g104940 I 0.776
Bo4g195370 Brassica oleracea Bo4g195370 I 0.776
Bo6g077190 Brassica oleracea Bo6g077190 I 0.776
Bo8g095300 Brassica oleracea Bo8g095300 I 0.776
Bra000372 Brassica rapa Bra000372 I 0.776
Bra003422 Brassica rapa Bra003422 I 0.776
Bra007545 Brassica rapa Bra007545 I 0.776
Bra014483 Brassica rapa Bra014483 I 0.776
Bra040325 Brassica rapa Bra040325 I 0.776
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.776
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.776
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.776
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.776
OB04G28040 Oryza brachyantha OB04G28040 I 0.776
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.776
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.776
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.776
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.776
ZAT1 Arabidopsis thaliana AT1G02030 D 0.775
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.775
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.775
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.775
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.775
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.775
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.773
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.772
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.770
TCM_014903 Theobroma cacao TCM_014903 I 0.769
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.766
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.766
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.766
30147.m014242 Ricinus communis 30147.m014242 I 0.766
mgf017082m Mimulus guttatus mgf017082m I 0.766
mgf021094m Mimulus guttatus mgf021094m I 0.766
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.766
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.765
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.765
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.765
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.763
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.762
Cla001400 Citrullus lanatus Cla001400 I 0.761
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.760
ZAT10 Arabidopsis thaliana AT1G27730 D 0.760
Bo3g142840 Brassica oleracea Bo3g142840 I 0.760
Bo7g048650 Brassica oleracea Bo7g048650 I 0.760
Bra010922 Brassica rapa Bra010922 I 0.760
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.760
TCM_000780 Theobroma cacao TCM_000780 I 0.760
29661.m000908 Ricinus communis 29661.m000908 I 0.760
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.760
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.760
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.760
ZAT6 Arabidopsis thaliana AT5G04340 D 0.759
AZF3 Arabidopsis thaliana AT5G43170 I 0.759
Bo7g065200 Brassica oleracea Bo7g065200 I 0.759
Bo9g181170 Brassica oleracea Bo9g181170 I 0.759
Bra009464 Brassica rapa Bra009464 I 0.759
Bra018817 Brassica rapa Bra018817 I 0.759
Bra033666 Brassica rapa Bra033666 I 0.759
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.759
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.759
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.759
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.759
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.759
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.759
OS12G0583700 Oryza sativa OS12G0583700 I 0.759
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.759
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.759
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.759
Si023013m.g Setaria italica Si023013m.g I 0.759
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.759
Ca_05641 Cicer arietinum Ca_05641 I 0.759
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.759
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.759
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.759
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.759
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.759
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.759
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.759
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.759
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.759
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.759
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.759
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.758
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.758