cassava32957.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava32957.m1 T137865_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.784 0.804
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.784 0.804
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.781 0.783
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.781 0.783
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.781 0.783
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.776 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.776 0.761
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.776 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava32957.m1 C2H2 ZF 73 95
cassava32957.m1 C2H2 ZF 130 152

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.819
Bra018817 Brassica rapa Bra018817 I 0.818
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.808
Bo1g081350 Brassica oleracea Bo1g081350 I 0.800
Bra012914 Brassica rapa Bra012914 I 0.800
Bra029985 Brassica rapa Bra029985 I 0.800
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.800
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.795
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.794
Cla001400 Citrullus lanatus Cla001400 I 0.794
28152.m000908 Ricinus communis 28152.m000908 I 0.794
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.794
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.794
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.794
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.790
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.789
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.789
30147.m014242 Ricinus communis 30147.m014242 I 0.788
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.788
Bo7g048650 Brassica oleracea Bo7g048650 I 0.786
TCM_000780 Theobroma cacao TCM_000780 I 0.786
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.786
30170.m013751 Ricinus communis 30170.m013751 I 0.786
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.786
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.785
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.785
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.785
AZF2 Arabidopsis thaliana AT3G19580 D 0.784
ZAT6 Arabidopsis thaliana AT5G04340 D 0.784
Bo1g113530 Brassica oleracea Bo1g113530 I 0.784
Bo5g113850 Brassica oleracea Bo5g113850 I 0.784
Bo7g065200 Brassica oleracea Bo7g065200 I 0.784
Bo9g181170 Brassica oleracea Bo9g181170 I 0.784
Bra009464 Brassica rapa Bra009464 I 0.784
Bra022436 Brassica rapa Bra022436 I 0.784
Bra033666 Brassica rapa Bra033666 I 0.784
Bra038219 Brassica rapa Bra038219 I 0.784
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.784
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.784
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.784
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.784
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.784
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.784
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.784
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.784
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.784
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.784
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.784
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.784
TCM_007214 Theobroma cacao TCM_007214 I 0.784
TCM_034720 Theobroma cacao TCM_034720 I 0.784
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.784
Ca_01586 Cicer arietinum Ca_01586 I 0.784
Ca_18364 Cicer arietinum Ca_18364 I 0.784
Pm005390 Prunus mume Pm005390 I 0.784
Pm021284 Prunus mume Pm021284 I 0.784
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.784
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.784
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.784
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.784
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.784
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.784
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.784
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.784
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.784
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.784
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.784
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.784
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.784
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.784
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.784
MDP0000198015 Malus domestica MDP0000198015 I 0.784
MDP0000319225 Malus domestica MDP0000319225 I 0.784
MDP0000573176 Malus domestica MDP0000573176 I 0.784
MDP0000762756 Malus domestica MDP0000762756 I 0.784
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.784
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.784
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.784
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.784
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.784
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.784
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.784
PK10188.1 Cannabis sativa PK10188.1 I 0.784
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.784
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.784
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.784
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.784
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.783
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.782
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.782
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.782
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.782
ZAT10 Arabidopsis thaliana AT1G27730 D 0.781
Bo3g142840 Brassica oleracea Bo3g142840 I 0.781
Bra010922 Brassica rapa Bra010922 I 0.781
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.781
mgf006006m Mimulus guttatus mgf006006m I 0.781
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.781
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.780
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.780
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.779
AZF3 Arabidopsis thaliana AT5G43170 I 0.778
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.778
29661.m000908 Ricinus communis 29661.m000908 I 0.777
ZAT4 Arabidopsis thaliana AT2G45120 D 0.776
ZAT9 Arabidopsis thaliana AT3G60580 D 0.776
AZF1 Arabidopsis thaliana AT5G67450 D 0.776
Bo2g168030 Brassica oleracea Bo2g168030 I 0.776
Bo3g037560 Brassica oleracea Bo3g037560 I 0.776
Bo4g195370 Brassica oleracea Bo4g195370 I 0.776
Bo9g019120 Brassica oleracea Bo9g019120 I 0.776
Bra000372 Brassica rapa Bra000372 I 0.776
Bra031834 Brassica rapa Bra031834 I 0.776
Bra037845 Brassica rapa Bra037845 I 0.776
Bra040325 Brassica rapa Bra040325 I 0.776
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.776
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.776
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.776
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.776
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.776
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.776
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.776
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.776
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.776
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.776
OB03G42170 Oryza brachyantha OB03G42170 I 0.774
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.770
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.770
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.770
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.770
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.770
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.770
Ca_23672 Cicer arietinum Ca_23672 I 0.770
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.770
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.770
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.770
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.770
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.770
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.770
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.770
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.769
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.769
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.769
Cla022966 Citrullus lanatus Cla022966 I 0.767
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.767
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.766
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.764
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.764
ZAT11 Arabidopsis thaliana AT2G37430 I 0.763
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.763
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.763
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.763
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.763
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.763
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.763
Bo5g052290 Brassica oleracea Bo5g052290 I 0.762
Bra032845 Brassica rapa Bra032845 I 0.762
Bra039806 Brassica rapa Bra039806 I 0.762
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.762
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.762
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.762
MDP0000237150 Malus domestica MDP0000237150 I 0.762
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.761
VIT_06s0009g02470 Vitis vinifera VIT_06s0009g02470 I 0.761
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.760
Ca_05641 Cicer arietinum Ca_05641 I 0.760
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.760
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.760
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.760
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.759
Bra030981 Brassica rapa Bra030981 I 0.756