VIT_06s0009g02470 (Vitis vinifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 VIT_06s0009g02470 T131460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.768 0.609
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.768 0.609
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_06s0009g02470.t01 C2H2 ZF 315 337
VIT_06s0009g02470.t01 C2H2 ZF 365 387

Links

Other C2H2 ZF family TFs
Other Vitis vinifera TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT11 Arabidopsis thaliana AT2G37430 I 0.769
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.769
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.769
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.769
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.769
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.769
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.769
PGSC0003DMG400015558 Solanum tuberosum PGSC0003DMG400015558 I 0.769
Solyc11g073060.1 Solanum lycopersicum Solyc11g073060.1 I 0.769
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.768
Bo00576s170 Brassica oleracea Bo00576s170 I 0.768
Bra003148 Brassica rapa Bra003148 I 0.768
Bra039806 Brassica rapa Bra039806 I 0.768
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.768
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.768
GLYMA13G40860 Glycine max GLYMA13G40860 I 0.768
GLYMA15G04570 Glycine max GLYMA15G04570 I 0.768
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.768
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.768
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.768
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.768
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.768
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.768
MDP0000237150 Malus domestica MDP0000237150 I 0.768
Bo1g081350 Brassica oleracea Bo1g081350 I 0.765
Bra012914 Brassica rapa Bra012914 I 0.765
Bra029985 Brassica rapa Bra029985 I 0.765
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.765
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.764
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.763
Bo6g067580 Brassica oleracea Bo6g067580 I 0.762
Bra030981 Brassica rapa Bra030981 I 0.762
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.762
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.762
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.761
Bra018817 Brassica rapa Bra018817 I 0.757