Solyc01g107170.2 (Solanum lycopersicum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Solyc01g107170.2 T129345_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.788 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.781 0.761
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.781 0.761
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.781 0.761
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.758 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g107170.2.1 C2H2 ZF 135 157
Solyc01g107170.2.1 C2H2 ZF 195 217

Links

Other C2H2 ZF family TFs
Other Solanum lycopersicum TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.797
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.794
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.794
Si032711m.g Setaria italica Si032711m.g I 0.794
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.794
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.794
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.791
ZAT6 Arabidopsis thaliana AT5G04340 D 0.788
Bo9g181170 Brassica oleracea Bo9g181170 I 0.788
Bra009464 Brassica rapa Bra009464 I 0.788
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.788
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.788
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.788
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.788
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.788
Bo5g052290 Brassica oleracea Bo5g052290 I 0.786
Bo7g048650 Brassica oleracea Bo7g048650 I 0.786
Bra032845 Brassica rapa Bra032845 I 0.786
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.786
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.786
Bo7g065200 Brassica oleracea Bo7g065200 I 0.782
Bra033666 Brassica rapa Bra033666 I 0.782
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.782
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.782
Ca_05641 Cicer arietinum Ca_05641 I 0.782
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.782
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.782
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.782
ZAT10 Arabidopsis thaliana AT1G27730 D 0.781
Bo3g142840 Brassica oleracea Bo3g142840 I 0.781
Bra010922 Brassica rapa Bra010922 I 0.781
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.781
AZF3 Arabidopsis thaliana AT5G43170 I 0.776
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.776
OS12G0583700 Oryza sativa OS12G0583700 I 0.776
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.776
mgf017082m Mimulus guttatus mgf017082m I 0.775
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.773
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.773
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.773
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.772
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.772
Cla022966 Citrullus lanatus Cla022966 I 0.771
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.771
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.770
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.769
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.769
30174.m008818 Ricinus communis 30174.m008818 I 0.769
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.769
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.769
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.769
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.769
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.768
28152.m000908 Ricinus communis 28152.m000908 I 0.768
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.768
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.768
mgf021094m Mimulus guttatus mgf021094m I 0.768
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.768
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.768
Bra018817 Brassica rapa Bra018817 I 0.767
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.767
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.767
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.766
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.766
OB03G31780 Oryza brachyantha OB03G31780 I 0.766
OBART03G22570 Oryza barthii OBART03G22570 I 0.766
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.766
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.766
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.766
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.766
OS03G0437200 Oryza sativa OS03G0437200 I 0.766
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.766
29661.m000908 Ricinus communis 29661.m000908 I 0.765
Bo1g113530 Brassica oleracea Bo1g113530 I 0.764
Bo5g113850 Brassica oleracea Bo5g113850 I 0.764
Bra022436 Brassica rapa Bra022436 I 0.764
Bra038219 Brassica rapa Bra038219 I 0.764
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.764
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.764
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.764
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.764
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.764
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.764
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.764
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.764
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.764
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.764
TCM_007214 Theobroma cacao TCM_007214 I 0.764
TCM_034720 Theobroma cacao TCM_034720 I 0.764
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.764
Ca_01586 Cicer arietinum Ca_01586 I 0.764
Ca_18364 Cicer arietinum Ca_18364 I 0.764
Pm005390 Prunus mume Pm005390 I 0.764
Pm021284 Prunus mume Pm021284 I 0.764
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.764
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.764
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.764
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.764
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.764
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.764
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.764
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.764
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.764
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.764
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.764
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.764
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.764
MDP0000198015 Malus domestica MDP0000198015 I 0.764
MDP0000319225 Malus domestica MDP0000319225 I 0.764
MDP0000573176 Malus domestica MDP0000573176 I 0.764
MDP0000762756 Malus domestica MDP0000762756 I 0.764
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.764
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.764
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.764
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.764
PK10188.1 Cannabis sativa PK10188.1 I 0.764
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.764
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.764
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.764
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.764
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.763
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.763
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.762
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.760
AZF2 Arabidopsis thaliana AT3G19580 D 0.758
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.758
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.758
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.758
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.758
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.758
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.758
TCM_000780 Theobroma cacao TCM_000780 I 0.757
30170.m013751 Ricinus communis 30170.m013751 I 0.757
mgf006006m Mimulus guttatus mgf006006m I 0.757
mgf021789m Mimulus guttatus mgf021789m I 0.757
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.756
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.756