Bra040325 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra040325 T081977_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.803 0.935
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.803 0.891
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.778 0.848
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.696
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.775 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.696
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.717
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040325.1-P C2H2 ZF 168 190
Bra040325.1-P C2H2 ZF 216 238

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g037560 Brassica oleracea Bo3g037560 I 0.827
Bo4g195370 Brassica oleracea Bo4g195370 I 0.827
Bra000372 Brassica rapa Bra000372 I 0.827
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.827
ZAT4 Arabidopsis thaliana AT2G45120 D 0.803
ZAT9 Arabidopsis thaliana AT3G60580 D 0.803
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.803
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.803
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.803
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.803
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.803
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.803
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.799
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.799
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.799
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.798
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.798
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.797
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.797
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.797
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.797
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.797
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.797
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.797
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.796
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.796
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.794
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.792
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.788
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.788
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.788
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.788
Ca_23672 Cicer arietinum Ca_23672 I 0.788
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.788
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.788
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.784
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.782
Bo4g104940 Brassica oleracea Bo4g104940 I 0.779
Bo6g077190 Brassica oleracea Bo6g077190 I 0.779
Bo8g095300 Brassica oleracea Bo8g095300 I 0.779
Bra003422 Brassica rapa Bra003422 I 0.779
Bra007545 Brassica rapa Bra007545 I 0.779
Bra014483 Brassica rapa Bra014483 I 0.779
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.779
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.779
ZAT1 Arabidopsis thaliana AT1G02030 D 0.778
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.778
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.777
ZAT10 Arabidopsis thaliana AT1G27730 D 0.776
Bo3g142840 Brassica oleracea Bo3g142840 I 0.776
Bo7g048650 Brassica oleracea Bo7g048650 I 0.776
Bra010922 Brassica rapa Bra010922 I 0.776
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.776
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.776
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.776
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.776
TCM_000780 Theobroma cacao TCM_000780 I 0.776
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.776
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.776
30170.m013751 Ricinus communis 30170.m013751 I 0.776
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.776
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.776
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.776
mgf006006m Mimulus guttatus mgf006006m I 0.776
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.776
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.776
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.776
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.776
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.776
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.775
AZF2 Arabidopsis thaliana AT3G19580 D 0.775
ZAT6 Arabidopsis thaliana AT5G04340 D 0.775
Bo1g113530 Brassica oleracea Bo1g113530 I 0.775
Bo5g113850 Brassica oleracea Bo5g113850 I 0.775
Bo7g065200 Brassica oleracea Bo7g065200 I 0.775
Bo9g181170 Brassica oleracea Bo9g181170 I 0.775
Bra009464 Brassica rapa Bra009464 I 0.775
Bra018817 Brassica rapa Bra018817 I 0.775
Bra022436 Brassica rapa Bra022436 I 0.775
Bra033666 Brassica rapa Bra033666 I 0.775
Bra038219 Brassica rapa Bra038219 I 0.775
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.775
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.775
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.775
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.775
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.775
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.775
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.775
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.775
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.775
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.775
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.775
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.775
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.775
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.775
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.775
TCM_007214 Theobroma cacao TCM_007214 I 0.775
TCM_034720 Theobroma cacao TCM_034720 I 0.775
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.775
Ca_01586 Cicer arietinum Ca_01586 I 0.775
Ca_18364 Cicer arietinum Ca_18364 I 0.775
Pm005390 Prunus mume Pm005390 I 0.775
Pm021284 Prunus mume Pm021284 I 0.775
28152.m000908 Ricinus communis 28152.m000908 I 0.775
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.775
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.775
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.775
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.775
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.775
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.775
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.775
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.775
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.775
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.775
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.775
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.775
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.775
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.775
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.775
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.775
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.775
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.775
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.775
MDP0000198015 Malus domestica MDP0000198015 I 0.775
MDP0000319225 Malus domestica MDP0000319225 I 0.775
MDP0000573176 Malus domestica MDP0000573176 I 0.775
MDP0000762756 Malus domestica MDP0000762756 I 0.775
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.775
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.775
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.775
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.775
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.775
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.775
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.775
PK10188.1 Cannabis sativa PK10188.1 I 0.775
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.775
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.775
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.773
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.773
30174.m008818 Ricinus communis 30174.m008818 I 0.773
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.773
30147.m014242 Ricinus communis 30147.m014242 I 0.772
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.772
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.772
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.772
AZF3 Arabidopsis thaliana AT5G43170 I 0.769
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.769
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.769
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.768
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.768
AZF1 Arabidopsis thaliana AT5G67450 D 0.766
Bo1g081350 Brassica oleracea Bo1g081350 I 0.766
Bo2g168030 Brassica oleracea Bo2g168030 I 0.766
Bo9g019120 Brassica oleracea Bo9g019120 I 0.766
Bra012914 Brassica rapa Bra012914 I 0.766
Bra029985 Brassica rapa Bra029985 I 0.766
Bra031834 Brassica rapa Bra031834 I 0.766
Bra037845 Brassica rapa Bra037845 I 0.766
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.766
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.766
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.766
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.766
OB03G42170 Oryza brachyantha OB03G42170 I 0.765
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.765
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.765
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.764
mgf021094m Mimulus guttatus mgf021094m I 0.763
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.762
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.762
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.762
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.762
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.762
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.762
OB04G28040 Oryza brachyantha OB04G28040 I 0.762
OBART04G21020 Oryza barthii OBART04G21020 I 0.762
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.762
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.762
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.762
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.762
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.762
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.762
OS04G0552700 Oryza sativa OS04G0552700 I 0.762
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.762
Si010615m.g Setaria italica Si010615m.g I 0.762
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.762
Cla001400 Citrullus lanatus Cla001400 I 0.761
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.760
Cla022966 Citrullus lanatus Cla022966 I 0.759
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.759
mgf017082m Mimulus guttatus mgf017082m I 0.758
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.756
TCM_014903 Theobroma cacao TCM_014903 I 0.756