Pavir.J15304 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J15304 T143418_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J15304.1.p C2H2 ZF 93 115
Pavir.J15304.1.p C2H2 ZF 155 177

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb02g038000 Sorghum bicolor Sb02g038000 N 0.827
Traes_2BS_DD07C2EE6 Triticum aestivum Traes_2BS_DD07C2EE6 N 0.827
Pavir.J16973 Panicum virgatum Pavir.J16973 N 0.827
BRADI1G22940 Brachypodium distachyon BRADI1G22940 N 0.803
BGIOSGA026045 Oryza indica BGIOSGA026045 N 0.797
GRMZM2G089557 Zea mays GRMZM2G089557 N 0.797
ONIVA07G18980 Oryza nivara ONIVA07G18980 N 0.797
ORUFI07G21440 Oryza rufipogon ORUFI07G21440 N 0.797
OS07G0588600 Oryza sativa OS07G0588600 N 0.797
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.773
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.772
LPERR07G17860 Leersia perrieri LPERR07G17860 N 0.768
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.762
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.762
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.762
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.761
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.758
29661.m000908 Ricinus communis 29661.m000908 I 0.758
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.757
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.757