Pavir.J36164 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J36164 T143431_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J36164.1.p C2H2 ZF 74 96

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.000
mgf017629m Mimulus guttatus mgf017629m I 0.000
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.000
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I 0.000
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000