Thhalv10006508m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10006508m.g T143537_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.803 0.978
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.803 0.913
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.802 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.775 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10006508m C2H2 ZF 202 224
Thhalv10006508m C2H2 ZF 255 277

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29703.m001536 Ricinus communis 29703.m001536 N
AMTR_s00025p00060270 Amborella trichopoda AMTR_s00025p00060270 N
Aquca_026_00063 Aquilegia coerulea Aquca_026_00063 N
MTERF4 Arabidopsis thaliana AT4G02990 N
Bo9g006180 Brassica oleracea Bo9g006180 N
Bostr.2983s0143 Boechera stricta Bostr.2983s0143 N
Bra036228 Brassica rapa Bra036228 N
Cagra.2552s0028 Capsella grandiflora Cagra.2552s0028 N
Carubv10003638m.g Capsella rubella Carubv10003638m.g N
Ca_25867 Cicer arietinum Ca_25867 N
Ciclev10019732m.g Citrus clementina Ciclev10019732m.g N
Cla005647 Citrullus lanatus Cla005647 N
Cucsa.033690 Cucumis sativus Cucsa.033690 N
Eucgr.A01358 Eucalyptus grandis Eucgr.A01358 N
fgenesh2_kg.6__3397__AT4G02990.1 Arabidopsis lyrata fgenesh2_kg.6__3397__AT4G02990.1 N
gene27730-v1.0-hybrid Fragaria vesca gene27730-v1.0-hybrid N
GLYMA02G38800 Glycine max GLYMA02G38800 N
Gorai.004G084100 Gossypium raimondii Gorai.004G084100 N
Lus10014877.g Linum usitatissimum Lus10014877.g N
mgf007983m Mimulus guttatus mgf007983m N
mgf009605m Mimulus guttatus mgf009605m N
MTR_5g068860 Medicago truncatula MTR_5g068860 N
orange1.1g010066m.g Citrus sinensis orange1.1g010066m.g N
PGSC0003DMG400002856 Solanum tuberosum PGSC0003DMG400002856 N
PK15839.1 Cannabis sativa PK15839.1 N
Pm019894 Prunus mume Pm019894 N
POPTR_0014s13360 Populus trichocarpa POPTR_0014s13360 N
PRUPE_ppa004198mg Prunus persica PRUPE_ppa004198mg N
SapurV1A.0053s0470 Salix purpurea SapurV1A.0053s0470 N
Solyc04g005630.2 Solanum lycopersicum Solyc04g005630.2 N
TCM_004475 Theobroma cacao TCM_004475 N
Thhalv10028570m.g Eutrema salsugineum Thhalv10028570m.g N
VIT_07s0104g00720 Vitis vinifera VIT_07s0104g00720 N