SMU15031708 (Schmidtea mediterranea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SMU15031708 T145179_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.772 0.837
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.772 0.837
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.772 0.837
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.772 0.837
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.772 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15031708 C2H2 ZF 232 259
SMU15031708 C2H2 ZF 265 289
SMU15031708 C2H2 ZF 295 319
SMU15031708 C2H2 ZF 325 349

Links

Other C2H2 ZF family TFs
Other Schmidtea mediterranea TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL56 Arabidopsis thaliana AT1G60880 I
Bo9g043470 Brassica oleracea Bo9g043470 I
Bo9g043530 Brassica oleracea Bo9g043530 I
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I
Bra027116 Brassica rapa Bra027116 I
Bra040965 Brassica rapa Bra040965 I
Carubv10021715m.g Capsella rubella Carubv10021715m.g I
AGL55 Arabidopsis lyrata fgenesh2_kg.2__370__AT1G60920.1 I
AGL56 Arabidopsis lyrata fgenesh2_kg.2__374__AT1G60880.1 I
Thhalv10023813m.g Eutrema salsugineum Thhalv10023813m.g I
Thhalv10023871m.g Eutrema salsugineum Thhalv10023871m.g I