Bo9g043470 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo9g043470 T253197_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g043470.1 MADS box 12 64

Links

Other MADS box family TFs
Other Brassica oleracea TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra027116 Brassica rapa Bra027116 I 0.938
Thhalv10023871m.g Eutrema salsugineum Thhalv10023871m.g I 0.812
Thhalv10023813m.g Eutrema salsugineum Thhalv10023813m.g I 0.771
AGL55 Arabidopsis thaliana AT1G60920 D 0.750
AGL55 Arabidopsis lyrata fgenesh2_kg.2__370__AT1G60920.1 I 0.750
AGL56 Arabidopsis lyrata fgenesh2_kg.2__374__AT1G60880.1 I 0.750
Bo9g043530 Brassica oleracea Bo9g043530 I 0.729
Bra040965 Brassica rapa Bra040965 I 0.729
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I 0.729
Carubv10022197m.g Capsella rubella Carubv10022197m.g I 0.729
Carubv10021917m.g Capsella rubella Carubv10021917m.g I 0.708
Carubv10025699m.g Capsella rubella Carubv10025699m.g N 0.708