snai3 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-488030 T145434_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.775 0.844
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.775 0.844
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.775 0.844
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.775 0.844
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.775 0.844
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.775 0.844
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.775 0.844
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.775 0.844
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.772 0.844
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.772 0.844
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI60807 C2H2 ZF 147 169
AAI60807 C2H2 ZF 173 195
AAI60807 C2H2 ZF 201 223
AAI60807 C2H2 ZF 229 249

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.775
SNAI1 Bos taurus ENSBTAG00000014554 I 0.778
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.778
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.775
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.775
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.775
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.775
snai1a Danio rerio ENSDARG00000056995 I 0.827
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.775
ENSDNOG00000024891 Dasypus novemcinctus ENSDNOG00000024891 I 0.770
SNAI1 Equus caballus ENSECAG00000009787 I 0.760
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.775
SNAI1 Felis catus ENSFCAG00000010558 I 0.775
SNAI1 Homo sapiens ENSG00000124216 D 0.775
snai1a Gasterosteus aculeatus ENSGACG00000010147 I 0.797
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.775
ENSGMOG00000017815 Gadus morhua ENSGMOG00000017815 I 0.797
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.775
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.775
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.775
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.775
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.775
Snai1 Mus musculus ENSMUSG00000042821 D 0.772
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.775
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.778
SNAI1 Oryctolagus cuniculus ENSOCUG00000005422 I 0.760
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.775
ENSONIG00000020305 Oreochromis niloticus ENSONIG00000020305 I 0.797
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.775
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.775
ENSPFOG00000015709 Poecilia formosa ENSPFOG00000015709 I 0.797
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.775
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.778
Snai1 Rattus norvegicus ENSRNOG00000009594 I 0.772
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.775
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.775
snai1a Tetraodon nigroviridis ENSTNIG00000007311 I 0.797
snai1a Takifugu rubripes ENSTRUG00000012293 I 0.797
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.778
ENSXMAG00000009637 Xiphophorus maculatus ENSXMAG00000009637 I 0.797
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I 0.773
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.774