ACUA020861 (Anopheles culicifacies)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ACUA020861 T148011_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.809 0.956
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.809 0.956
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.809 0.956
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.809 0.956
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.795 0.921
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.795 0.921
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.795 0.921
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.781 0.833
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.781 0.833
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.781 0.833
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.781 0.833
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.772 0.816
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.772 0.816
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.772 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACUA020861-PA C2H2 ZF 612 634
ACUA020861-PA C2H2 ZF 643 665
ACUA020861-PA C2H2 ZF 669 691
ACUA020861-PA C2H2 ZF 697 719
ACUA020861-PA C2H2 ZF 725 746

Links

Other C2H2 ZF family TFs
Other Anopheles culicifacies TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA020378 Oryza indica BGIOSGA020378 N 0.000
GRMZM2G117497 Zea mays GRMZM2G117497 N 0.000
OB05G33630 Oryza brachyantha OB05G33630 N 0.000
OBART05G26130 Oryza barthii OBART05G26130 N 0.000
OGLUM05G27750 Oryza glumaepatula OGLUM05G27750 N 0.000
OMERI05G22790 Oryza meridionalis OMERI05G22790 N 0.000
OPUNC05G23730 Oryza punctata OPUNC05G23730 N 0.000
ORGLA05G0226000 Oryza glaberrima ORGLA05G0226000 N 0.000
ORUFI05G28020 Oryza rufipogon ORUFI05G28020 N 0.000
OS05G0567600 Oryza sativa OS05G0567600 N 0.000
Pavir.Ca00951 Panicum virgatum Pavir.Ca00951 N 0.000
Pavir.J09915 Panicum virgatum Pavir.J09915 N 0.000
Sb09g028790 Sorghum bicolor Sb09g028790 N 0.000
Si024486m.g Setaria italica Si024486m.g N 0.000