AFAF017001 (Anopheles farauti)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 AFAF017001 T148710_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.809 0.956
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.809 0.956
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.809 0.956
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.809 0.956
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.795 0.921
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.795 0.921
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.795 0.921
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.781 0.833
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.781 0.833
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.781 0.833
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.781 0.833
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.772 0.816
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.772 0.816
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.772 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AFAF017001-PA C2H2 ZF 642 664
AFAF017001-PA C2H2 ZF 673 695
AFAF017001-PA C2H2 ZF 699 721
AFAF017001-PA C2H2 ZF 727 749
AFAF017001-PA C2H2 ZF 755 776

Links

Other C2H2 ZF family TFs
Other Anopheles farauti TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava21723.m1 Manihot esculenta cassava21723.m1 N 0.000
cassava32861.m1 Manihot esculenta cassava32861.m1 N 0.000
Ca_00768 Cicer arietinum Ca_00768 N 0.000
Cla017994 Citrullus lanatus Cla017994 N 0.000
Cucsa.083150 Cucumis sativus Cucsa.083150 N 0.000
Eucgr.K02071 Eucalyptus grandis Eucgr.K02071 N 0.000
evm.TU.supercontig_5.71 Carica papaya evm.TU.supercontig_5.71 N 0.000
GLYMA13G21560 Glycine max GLYMA13G21560 N 0.000
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.000
Gorai.002G159400 Gossypium raimondii Gorai.002G159400 N 0.000
Gorai.009G407200 Gossypium raimondii Gorai.009G407200 N 0.000
PGSC0003DMG400045042 Solanum tuberosum PGSC0003DMG400045042 I 0.000
Pm026227 Prunus mume Pm026227 N 0.000
PRUPE_ppa020711mg Prunus persica PRUPE_ppa020711mg N 0.000
Solyc10g083560.1 Solanum lycopersicum Solyc10g083560.1 I 0.000
TCM_022462 Theobroma cacao TCM_022462 N 0.000