CGOC_0000202301 (Cylicostephanus goldi)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 CGOC_0000202301 T152516_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
klu
M03680_2.00 		Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD		 SELEX
Nitta et al.(2015)
klu_1 		0.777 0.793
klu
M03681_2.00 		Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR		 SELEX
Nitta et al.(2015)
klu_2 		0.777 0.793
klu
M06114_2.00 		Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK		 B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469 		0.777 0.793
klu
M06115_2.00 		Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN		 B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469 		0.777 0.793
klu-1
M00637_2.00 		Caenorhabditis elegans
CDCCCMCV
BGKGGGHG		 PBM
Narasimhan et al.(2015)
pTH9355 		0.775 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CGOC_0000202301-mRNA-1 C2H2 ZF 233 256
CGOC_0000202301-mRNA-1 C2H2 ZF 273 295
CGOC_0000202301-mRNA-1 C2H2 ZF 301 323
CGOC_0000202301-mRNA-1 C2H2 ZF 329 351

Links

Other C2H2 ZF family TFs
Other Cylicostephanus goldi TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00088p00159600 Amborella trichopoda AMTR_s00088p00159600 N
Aquca_005_00236 Aquilegia coerulea Aquca_005_00236 N
BGIOSGA026020 Oryza indica BGIOSGA026020 N
BRADI1G23400 Brachypodium distachyon BRADI1G23400 N
Ciclev10008511m.g Citrus clementina Ciclev10008511m.g N
Cla003344 Citrullus lanatus Cla003344 N
Cucsa.304690 Cucumis sativus Cucsa.304690 N
F775_02643 Aegilops tauschii F775_02643 N
gene03554-v1.0-hybrid Fragaria vesca gene03554-v1.0-hybrid N
GRMZM2G130773 Zea mays GRMZM2G130773 N
GSMUA_Achr3G29890_001 Musa acuminata GSMUA_Achr3G29890_001 N
LPERR07G17420 Leersia perrieri LPERR07G17420 N
Lus10003775.g Linum usitatissimum Lus10003775.g N
MLOC_4927 Hordeum vulgare MLOC_4927 N
OB07G25840 Oryza brachyantha OB07G25840 N
OBART07G20100 Oryza barthii OBART07G20100 N
OGLUM07G19880 Oryza glumaepatula OGLUM07G19880 N
OMERI07G16780 Oryza meridionalis OMERI07G16780 N
OPUNC07G18990 Oryza punctata OPUNC07G18990 N
orange1.1g010604m.g Citrus sinensis orange1.1g010604m.g N
OS07G0583200 Oryza sativa OS07G0583200 N
Pavir.Bb03222 Panicum virgatum Pavir.Bb03222 N
Pavir.J07102 Panicum virgatum Pavir.J07102 N
PDK_20s1307431g001 Phoenix dactylifera PDK_20s1307431g001 N
Pm029551 Prunus mume Pm029551 N
PRUPE_ppa006059m1g Prunus persica PRUPE_ppa006059m1g N
PRUPE_ppa015320mg Prunus persica PRUPE_ppa015320mg N
Sb02g037620 Sorghum bicolor Sb02g037620 N
Solyc12g015640.1 Solanum lycopersicum Solyc12g015640.1 N
Traes_2AS_2C198FE96 Triticum aestivum Traes_2AS_2C198FE96 N
Traes_2BS_999491428 Triticum aestivum Traes_2BS_999491428 N
Traes_2DS_BCB7C3C11 Triticum aestivum Traes_2DS_BCB7C3C11 N
TRIUR3_21656 Triticum urartu TRIUR3_21656 N
VIT_19s0090g01770 Vitis vinifera VIT_19s0090g01770 N