L889_g21793 (Steinernema feltiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L889_g21793 T154442_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.771 0.763
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.771 0.763
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.771 0.763
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.771 0.763
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.765 0.789
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.765 0.789
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.765 0.789
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.765 0.789
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.765 0.772
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.765 0.772
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.765 0.772
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L889_g21793.t1 C2H2 ZF 168 190
L889_g21793.t1 C2H2 ZF 199 221
L889_g21793.t1 C2H2 ZF 225 247
L889_g21793.t1 C2H2 ZF 253 275
L889_g21793.t1 C2H2 ZF 281 302

Links

Other C2H2 ZF family TFs
Other Steinernema feltiae TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R012711 Calypte anna Aan_R012711 I 0.000
Afo_R003947 Aptenodytes forsteri Afo_R003947 I 0.000
Alligator_sinensis_CCG019192.1 Alligator sinensis Alligator_sinensis_CCG019192.1 I 0.000
MYNN Anolis carolinensis ENSACAG00000015699 I 0.000
ENSAMEG00000002034 Ailuropoda melanoleuca ENSAMEG00000002034 I 0.000
ENSAPLG00000007481 Anas platyrhynchos ENSAPLG00000007481 I 0.000
MYNN Canis familiaris ENSCAFG00000014700 I 0.000
MYNN Callithrix jacchus ENSCJAG00000002629 I 0.000
MYNN Cavia porcellus ENSCPOG00000011640 I 0.000
ENSCSAG00000012570 Chlorocebus sabaeus ENSCSAG00000012570 I 0.000
MYNN Dasypus novemcinctus ENSDNOG00000004681 I 0.000
MYNN Equus caballus ENSECAG00000016427 I 0.000
ENSFALG00000008628 Ficedula albicollis ENSFALG00000008628 I 0.000
MYNN Felis catus ENSFCAG00000000505 I 0.000
MYNN Homo sapiens ENSG00000085274 D 0.000
MYNN Gallus gallus ENSGALG00000009409 I 0.000
MYNN Gorilla gorilla ENSGGOG00000022638 I 0.000
ENSLOCG00000007120 Lepisosteus oculatus ENSLOCG00000007120 I 0.000
MYNN Meleagris gallopavo ENSMGAG00000010294 I 0.000
MYNN Macaca mulatta ENSMMUG00000021875 I 0.000
ENSMMUP00000038685 Macaca fascicularis ENSMMUP00000038685 I 0.000
MYNN Monodelphis domestica ENSMODG00000016120 I 0.000
ENSMPUG00000017089 Mustela putorius furo ENSMPUG00000017089 I 0.000
Mynn Mus musculus ENSMUSG00000037730 I 0.000
ENSNLEG00000005059 Nomascus leucogenys ENSNLEG00000005059 I 0.000
MYNN Ornithorhynchus anatinus ENSOANG00000010325 I 0.000
ENSOARG00000000757 Ovis aries ENSOARG00000000757 I 0.000
MYNN Oryctolagus cuniculus ENSOCUG00000003252 I 0.000
MYNN Otolemur garnettii ENSOGAG00000004734 I 0.000
ENSP00000326240-D1 Bos grunniens ENSP00000326240-D1 I 0.000
ENSPANG00000026081 Papio anubis ENSPANG00000026081 I 0.000
MYNN Procavia capensis ENSPCAG00000015202 I 0.000
ENSPPYG00000014280 Pongo abelii ENSPPYG00000014280 I 0.000
ENSPSIG00000004647 Pelodiscus sinensis ENSPSIG00000004647 I 0.000
MYNN Pan troglodytes ENSPTRG00000015605 I 0.000
Mynn Rattus norvegicus ENSRNOG00000027923 I 0.000
ENSSHAG00000016096 Sarcophilus harrisii ENSSHAG00000016096 I 0.000
MYNN Sus scrofa ENSSSCG00000026829 I 0.000
ENSSTOG00000004642 Ictidomys tridecemlineatus ENSSTOG00000004642 I 0.000
MYNN Tupaia belangeri ENSTBEG00000007630 I 0.000
MYNN Taeniopygia guttata ENSTGUG00000010998 I 0.000
MYNN Vicugna pacos ENSVPAG00000007981 I 0.000
Gfo_R004538 Geospiza fortis Gfo_R004538 I 0.000
Myotis_brandtii_MYNN_10024775 Myotis brandtii Myotis_brandtii_MYNN_10024775 I 0.000
Pvit_09122 Pogona vitticeps Pvit_09122 I 0.000
XP_002931590 Xenopus tropicalis XP_002931590 I 0.000