Gfo_R004538 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004538 T135710_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYNN
M08283_2.00 		Homo sapiens
GRCTYTTAWTTT
AAAWTAARAGYC		 ChIP-seq
Schmitges et al.(2016)
Q9NPC7_1-4.RCADE 		0.817 0.973
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004538 C2H2 ZF 308 329
Gfo_R004538 C2H2 ZF 335 357
Gfo_R004538 C2H2 ZF 363 386
Gfo_R004538 C2H2 ZF 392 414
Gfo_R004538 C2H2 ZF 420 442
Gfo_R004538 C2H2 ZF 448 470
Gfo_R004538 C2H2 ZF 476 498
Gfo_R004538 C2H2 ZF 504 527

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000008628 Ficedula albicollis ENSFALG00000008628 I 0.827
MYNN Taeniopygia guttata ENSTGUG00000010998 I 0.827
Aan_R012711 Calypte anna Aan_R012711 I 0.827
Afo_R003947 Aptenodytes forsteri Afo_R003947 I 0.827
ENSAPLG00000007481 Anas platyrhynchos ENSAPLG00000007481 I 0.826
MYNN Gallus gallus ENSGALG00000009409 I 0.824
MYNN Meleagris gallopavo ENSMGAG00000010294 I 0.824
MYNN Ornithorhynchus anatinus ENSOANG00000010325 I 0.824
ENSPSIG00000004647 Pelodiscus sinensis ENSPSIG00000004647 I 0.824
MYNN Otolemur garnettii ENSOGAG00000004734 I 0.823
Alligator_sinensis_CCG019192.1 Alligator sinensis Alligator_sinensis_CCG019192.1 I 0.823
ENSAMEG00000002034 Ailuropoda melanoleuca ENSAMEG00000002034 I 0.817
MYNN Canis familiaris ENSCAFG00000014700 I 0.817
MYNN Callithrix jacchus ENSCJAG00000002629 I 0.817
MYNN Cavia porcellus ENSCPOG00000011640 I 0.817
ENSCSAG00000012570 Chlorocebus sabaeus ENSCSAG00000012570 I 0.817
MYNN Dasypus novemcinctus ENSDNOG00000004681 I 0.817
MYNN Equus caballus ENSECAG00000016427 I 0.817
MYNN Felis catus ENSFCAG00000000505 I 0.817
MYNN Homo sapiens ENSG00000085274 D 0.817
MYNN Gorilla gorilla ENSGGOG00000022638 I 0.817
MYNN Macaca mulatta ENSMMUG00000021875 I 0.817
ENSMPUG00000017089 Mustela putorius furo ENSMPUG00000017089 I 0.817
Mynn Mus musculus ENSMUSG00000037730 I 0.817
ENSNLEG00000005059 Nomascus leucogenys ENSNLEG00000005059 I 0.817
ENSOARG00000000757 Ovis aries ENSOARG00000000757 I 0.817
MYNN Oryctolagus cuniculus ENSOCUG00000003252 I 0.817
ENSPANG00000026081 Papio anubis ENSPANG00000026081 I 0.817
MYNN Procavia capensis ENSPCAG00000015202 I 0.817
ENSPPYG00000014280 Pongo abelii ENSPPYG00000014280 I 0.817
MYNN Pan troglodytes ENSPTRG00000015605 I 0.817
Mynn Rattus norvegicus ENSRNOG00000027923 I 0.817
MYNN Sus scrofa ENSSSCG00000026829 I 0.817
MYNN Vicugna pacos ENSVPAG00000007981 I 0.817
ENSMMUP00000038685 Macaca fascicularis ENSMMUP00000038685 I 0.817
ENSP00000326240-D1 Bos grunniens ENSP00000326240-D1 I 0.817
Myotis_brandtii_MYNN_10024775 Myotis brandtii Myotis_brandtii_MYNN_10024775 I 0.817
ENSSTOG00000004642 Ictidomys tridecemlineatus ENSSTOG00000004642 I 0.815
MYNN Anolis carolinensis ENSACAG00000015699 I 0.814
MYNN Monodelphis domestica ENSMODG00000016120 I 0.812
ENSSHAG00000016096 Sarcophilus harrisii ENSSHAG00000016096 I 0.812
MYNN Tupaia belangeri ENSTBEG00000007630 I 0.808
mynn.L Xenopus laevis XB-GENE-941014 I 0.797
XP_002931590 Xenopus tropicalis XP_002931590 I 0.797
ENSLOCG00000007120 Lepisosteus oculatus ENSLOCG00000007120 I 0.777
Pvit_09122 Pogona vitticeps Pvit_09122 I 0.776