NBR_0000990501 (Nippostrongylus brasiliensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 NBR_0000990501 T155089_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.794 0.913
Osr2
M00132_2.00 		Mus musculus
NGCTWCYGNN
NNCRGWAGCN		 PBM
Badis et al.(2009)
Osr2_1727 		0.767 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
NBR_0000990501-mRNA-1 C2H2 ZF 126 148
NBR_0000990501-mRNA-1 C2H2 ZF 154 176
NBR_0000990501-mRNA-1 C2H2 ZF 182 204

Links

Other C2H2 ZF family TFs
Other Nippostrongylus brasiliensis TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA025103 Oryza indica BGIOSGA025103 N 0.000
F775_12081 Aegilops tauschii F775_12081 N 0.000
LPERR07G02170 Leersia perrieri LPERR07G02170 N 0.000
MLOC_63301 Hordeum vulgare MLOC_63301 N 0.000
OB07G11860 Oryza brachyantha OB07G11860 N 0.000
OBART07G02250 Oryza barthii OBART07G02250 N 0.000
OMERI07G01240 Oryza meridionalis OMERI07G01240 N 0.000
ONIVA03G11940 Oryza nivara ONIVA03G11940 N 0.000
OPUNC07G01990 Oryza punctata OPUNC07G01990 N 0.000
ORGLA07G0020000 Oryza glaberrima ORGLA07G0020000 N 0.000
ORUFI07G02080 Oryza rufipogon ORUFI07G02080 N 0.000
OS07G0134700 Oryza sativa OS07G0134700 N 0.000
Pavir.Bb00241 Panicum virgatum Pavir.Bb00241 N 0.000
Sb02g002530 Sorghum bicolor Sb02g002530 N 0.000
Si034797m.g Setaria italica Si034797m.g N 0.000
Traes_2DL_A795D8251 Triticum aestivum Traes_2DL_A795D8251 N 0.000
TRIUR3_15108 Triticum urartu TRIUR3_15108 N 0.000