RSKR_0000546600 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0000546600 T155895_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lsy-2
M00615_2.00 		Caenorhabditis elegans
NTACMGTANN
NNTACKGTAN		 PBM
Narasimhan et al.(2015)
pTH10810 		0.758 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000546600.1 C2H2 ZF 38 60
RSKR_0000546600.1 C2H2 ZF 66 88
RSKR_0000546600.1 C2H2 ZF 94 116

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA013600 Oryza indica BGIOSGA013600 N
GRMZM2G074501 Zea mays GRMZM2G074501 N
LPERR03G29370 Leersia perrieri LPERR03G29370 N
OB03G41880 Oryza brachyantha OB03G41880 N
OBART03G34930 Oryza barthii OBART03G34930 N
OGLUM03G34660 Oryza glumaepatula OGLUM03G34660 N
OMERI03G31980 Oryza meridionalis OMERI03G31980 N
ONIVA03G36430 Oryza nivara ONIVA03G36430 N
OPUNC03G31970 Oryza punctata OPUNC03G31970 N
ORGLA03G0319700 Oryza glaberrima ORGLA03G0319700 N
ORUFI03G36360 Oryza rufipogon ORUFI03G36360 N
OS03G0759700 Oryza sativa OS03G0759700 N
Pavir.Ia00382 Panicum virgatum Pavir.Ia00382 N
Sb01g007440 Sorghum bicolor Sb01g007440 N