LIN28A (Myotis lucifugus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSMLUG00000004699 T164625_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.714 0.714
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMLUP00000020726 CSD 53 94

Links

Other CSD family TFs
Other Myotis lucifugus TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m001968 Ricinus communis 29693.m001968 I 0.000
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.000
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.000
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.000
TCP2 Arabidopsis thaliana AT4G18390 D 0.000
PCF5 Oryza indica BGIOSGA002128 I 0.000
PCF6 Oryza indica BGIOSGA013684 I 0.000
PCF8 Oryza indica BGIOSGA037799 I 0.000
Bo1g019520 Brassica oleracea Bo1g019520 I 0.000
Bo1g129830 Brassica oleracea Bo1g129830 I 0.000
Bo5g127500 Brassica oleracea Bo5g127500 I 0.000
Bo7g105960 Brassica oleracea Bo7g105960 I 0.000
Bostr.30275s0311 Boechera stricta Bostr.30275s0311 I 0.000
Bra012600 Brassica rapa Bra012600 I 0.000
Bra027284 Brassica rapa Bra027284 I 0.000
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.000
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.000
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.000
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.000
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.000
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.000
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.000
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.000
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.000
Ca_00482 Cicer arietinum Ca_00482 I 0.000
Ca_05033 Cicer arietinum Ca_05033 I 0.000
Ca_16227 Cicer arietinum Ca_16227 I 0.000
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.000
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.000
Cla013734 Citrullus lanatus Cla013734 I 0.000
Cla023702 Citrullus lanatus Cla023702 I 0.000
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.000
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.000
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.000
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.000
e_gw1.207.98.1 Physcomitrella patens e_gw1.207.98.1 I 0.000
TCP2 Arabidopsis lyrata fgenesh2_kg.7__2455__AT4G18390.1 D 0.000
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.000
GLYMA05G27367 Glycine max GLYMA05G27367 I 0.000
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.000
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.000
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.000
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.000
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.000
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.000
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.000
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.000
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.000
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.000
GRMZM2G089361 Zea mays GRMZM2G089361 I 0.000
GRMZM2G115516 Zea mays GRMZM2G115516 I 0.000
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.000
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.000
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.000
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.000
GSMUA_Achr4G22960_001 Musa acuminata GSMUA_Achr4G22960_001 I 0.000
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.000
GSMUA_Achr5G02530_001 Musa acuminata GSMUA_Achr5G02530_001 I 0.000
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.000
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.000
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.000
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.000
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.000
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.000
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.000
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.000
MDP0000927314 Malus domestica MDP0000927314 I 0.000
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.000
MLOC_63989 Hordeum vulgare MLOC_63989 I 0.000
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.000
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.000
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.000
MTR_8g463380 Medicago truncatula MTR_8g463380 I 0.000
OB12G25740 Oryza brachyantha OB12G25740 N 0.000
OBART01G07230 Oryza barthii OBART01G07230 I 0.000
OBART12G00580 Oryza barthii OBART12G00580 I 0.000
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.000
OGLUM03G36280 Oryza glumaepatula OGLUM03G36280 I 0.000
OGLUM12G20570 Oryza glumaepatula OGLUM12G20570 I 0.000
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.000
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.000
OMERI03G33790 Oryza meridionalis OMERI03G33790 I 0.000
OMERI04G02350 Oryza meridionalis OMERI04G02350 N 0.000
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.000
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.000
ONIVA03G37780 Oryza nivara ONIVA03G37780 I 0.000
ONIVA12G17870 Oryza nivara ONIVA12G17870 I 0.000
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.000
OPUNC07G03260 Oryza punctata OPUNC07G03260 I 0.000
OPUNC12G17090 Oryza punctata OPUNC12G17090 I 0.000
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.000
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.000
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.000
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.000
ORGLA12G0161900 Oryza glaberrima ORGLA12G0161900 I 0.000
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.000
ORUFI03G38070 Oryza rufipogon ORUFI03G38070 I 0.000
ORUFI07G02160 Oryza rufipogon ORUFI07G02160 N 0.000
OS01G0213800 Oryza sativa OS01G0213800 D 0.000
PCF6 Oryza sativa OS03G0785800 I 0.000
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.000
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.000
Pavir.Ca02949 Panicum virgatum Pavir.Ca02949 I 0.000
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.000
Pavir.Ia00505 Panicum virgatum Pavir.Ia00505 I 0.000
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.000
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.000
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.000
Pavir.J36433 Panicum virgatum Pavir.J36433 I 0.000
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.000
Pavir.J38641 Panicum virgatum Pavir.J38641 N 0.000
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.000
PK12847.1 Cannabis sativa PK12847.1 I 0.000
Pm010440 Prunus mume Pm010440 I 0.000
Pm029788 Prunus mume Pm029788 I 0.000
XM_002300382.1 Populus trichocarpa POPTR_0001s38480 I 0.000
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.000
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.000
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.000
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.000
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.000
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.000
Sb01g006020 Sorghum bicolor Sb01g006020 I 0.000
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.000
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.000
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.000
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.000
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.000
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.000
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.000
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.000
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.000
Si004564m.g Setaria italica Si004564m.g I 0.000
Si022811m.g Setaria italica Si022811m.g I 0.000
Si022833m.g Setaria italica Si022833m.g I 0.000
Si029871m.g Setaria italica Si029871m.g I 0.000
Si036075m.g Setaria italica Si036075m.g I 0.000
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.000
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.000
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.000
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.000
TCM_029442 Theobroma cacao TCM_029442 I 0.000
Thhalv10025465m.g Eutrema salsugineum Thhalv10025465m.g I 0.000
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.000
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.000
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.000
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.000
Traes_2BS_03909B330 Triticum aestivum Traes_2BS_03909B330 N 0.000
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.000
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.000
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.000
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.000
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.000
VIT_19s0014g01680 Vitis vinifera VIT_19s0014g01680 I 0.000