LIN28B (Sorex araneus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSARG00000008374 T164778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000007561 CSD 30 102

Links

Other CSD family TFs
Other Sorex araneus TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AUEXF2481DRAFT_1504 Aureobasidium subglaciale AUEXF2481DRAFT_1504 N
estExt_Genewise1Plus.C_sca_12_chr5_2_00225 Nectria haematococca estExt_Genewise1Plus.C_sca_12_chr5_2_00225 N
F503_04718 Ophiostoma piceae uamh F503_04718 N
FFUJ_08283 Fusarium fujikuroi FFUJ_08283 N
FGRRES_10914 Fusarium graminearum FGRRES_10914 N
FOXG_12849 Fusarium oxysporum FOXG_12849 N
FPSE_01374 Fusarium pseudograminearum FPSE_01374 N
HMPREF1541_01855 Cyphellophora europaea HMPREF1541_01855 N
M437DRAFT_41932 Aureobasidium melanogenum M437DRAFT_41932 N
M438DRAFT_353945 Aureobasidium pullulans M438DRAFT_353945 N
NechaG68965 Fusarium solani NechaG68965 N
S40288_03578 Stachybotrys chartarum S40288_03578 N
VDAG_06923 Verticillium dahliae VDAG_06923 N
VDBG_05272 Verticillium albo atrum VDBG_05272 N
VDBG_05272 Verticillium alfalfae VDBG_05272 N