CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
kdm2ba
(
Takifugu rubripes
)
CxxC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02008 (zf-CXXC)
IPR002857
ENSTRUG00000005276
T168366_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KDM2B
M01911_2.00
Homo sapiens
NNNNNNCGN
NCGNNNNNN
PBM
Weirauch et al.(2014)
pTH9191
0.957
0.957
kdm2ba
M01909_2.00
Danio rerio
NNNNCGN
NCGNNNN
PBM
Weirauch et al.(2014)
pTH8577
1.000
1.000
FBXL19
M01916_2.00
Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN
PBM
Weirauch et al.(2014)
pTH8570
0.851
0.851
KDM2A
M01915_2.00
Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN
PBM
Weirauch et al.(2014)
pTH9212
0.947
0.947
A6H8I1_DANRE
M01906_2.00
Danio rerio
CGTACGYA
TRCGTACG
PBM
Weirauch et al.(2014)
pTH9257
0.809
0.809
BGIBMGA012843
M01907_2.00
Bombyx mori
NNCGCGTANVNN
NNBNTACGCGNN
PBM
Weirauch et al.(2014)
pTH9239
0.745
0.745
kdm2aa
M01910_2.00
Danio rerio
NCGNNNNNN
NNNNNNCGN
PBM
Weirauch et al.(2014)
pTH8585
0.723
0.723
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000012658
CxxC
46
92
GARRRRTRCRKCEACLRNECGECHFCRDMKKFGGPGRMKQSCIMRQC
ENSTRUP00000012659
CxxC
46
92
GARRRRTRCRKCEACLRNECGECHFCRDMKKFGGPGRMKQSCIMRQC
ENSTRUP00000012660
CxxC
1
19
MKKFGGPGRMKQSCIMRQC
Links
Other
CxxC
family TFs
Other
Takifugu rubripes
TFs
269 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
1998_YCR018C
Saccharomyces mikatae
1998_YCR018C
I
22202_YPL021W
Saccharomyces mikatae
22202_YPL021W
I
23503_YPL021W
Saccharomyces paradoxus
23503_YPL021W
I
24940_YPL021W
Saccharomyces bayanus
24940_YPL021W
I
ECM23
Saccharomyces cerevisiae
YPL021W
D