ebf3.L (Xenopus laevis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) XB-GENE-962547 T174859_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.974 0.974
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.935 0.935
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.935 0.935
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.935 0.935
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.887 0.887
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.883 0.883
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.874 0.874
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.740 0.740
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAC15659 EBF1 17 247
AAI70260 EBF1 17 247

Links

Other EBF1 family TFs
Other Xenopus laevis TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN946_scf184844.g88 Trametes cinnabarina BN946_scf184844.g88 N
CC1G_07693 Coprinopsis cinerea CC1G_07693 N
CERSUDRAFT_88317 Ceriporiopsis subvermispora CERSUDRAFT_88317 N
CY34DRAFT_76552 Suillus luteus CY34DRAFT_76552 N
DICSQDRAFT_174574 Dichomitus squalens DICSQDRAFT_174574 N
estExt_fgenesh3_kg.C_120059 Heterobasidion annosum estExt_fgenesh3_kg.C_120059 N
fgenesh1_pg.C_scaffold_7000466 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000466 N
FIBRA_08064 Fibroporia radiculosa FIBRA_08064 N
FOMPIDRAFT_152036 Fomitopsis pinicola FOMPIDRAFT_152036 N
GALMADRAFT_242061 Galerina marginata GALMADRAFT_242061 N
HETIRDRAFT_411134 Heterobasidion irregulare HETIRDRAFT_411134 N
HYDPIDRAFT_115073 Hydnomerulius pinastri HYDPIDRAFT_115073 N
JAAARDRAFT_34133 Jaapia argillacea JAAARDRAFT_34133 N
M378DRAFT_170182 Amanita muscaria M378DRAFT_170182 N
M407DRAFT_110022 Tulasnella calospora M407DRAFT_110022 N
M413DRAFT_440277 Hebeloma cylindrosporum M413DRAFT_440277 N
PAXINDRAFT_22214 Paxillus involutus PAXINDRAFT_22214 N
PAXRUDRAFT_145041 Paxillus rubicundulus PAXRUDRAFT_145041 N
PHACADRAFT_251386 Phanerochaete carnosa PHACADRAFT_251386 N
PILCRDRAFT_810626 Piloderma croceum PILCRDRAFT_810626 N
PISMIDRAFT_681565 Pisolithus microcarpus PISMIDRAFT_681565 N
POSPLDRAFT_92468 Postia placenta POSPLDRAFT_92468 N
SCHCODRAFT_112222 Schizophyllum commune SCHCODRAFT_112222 N
SERLA73DRAFT_175691 Serpula lacrymans SERLA73DRAFT_175691 N