CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG017634.1
(
Alligator sinensis
)
Ets
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00178 (Ets)
IPR000418
Alligator_sinensis_CCG017634.1
T177686_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Spi1
M00155_2.00
Mus musculus
NNNVGGAAVH
DBTTCCBNNN
PBM
Badis et al.(2009)
Sfpi1_1034
0.995
0.963
Spi1
M01475_2.00
Mus musculus
DDNVGGAASY
RSTTCCBNHH
PBM
Wei et al.(2010)
Sfpi1
0.995
0.963
SPI1
M02965_2.00
Homo sapiens
RAAAAGMGGAAGTW
WACTTCCKCTTTTY
SELEX
Jolma et al.(2013)
SPI1_1
0.995
0.963
SPI1
M07944_2.00
Homo sapiens
NRAAWGRGGAASTGRRANN
NNTYYCASTTCCYCWTTYN
ChIP-seq
Gerstein et al.(2012)
GM12878_PU1_HudsonAlpha
0.995
0.963
SPI1
M07945_2.00
Homo sapiens
AAWGRGGAASTGARAVHNN
NNDBTYTCASTTCCYCWTT
ChIP-seq
Gerstein et al.(2012)
GM12891_PU1_HudsonAlpha
0.995
0.963
SPI1
M07946_2.00
Homo sapiens
RRAAAGAGGAAGTGV
BCACTTCCTCTTTYY
ChIP-seq
Gerstein et al.(2012)
K562_PU1_HudsonAlpha
0.995
0.963
SPI1
M08026_2.00
Homo sapiens
VRAAWGRGGAAGTGV
BCACTTCCYCWTTYB
ChIP-seq
Chen et al.(2011)
SRP005406_SPI1
0.995
0.963
Spi1
M08027_2.00
Mus musculus
VRRAWRRGGAAGWVD
HBWCTTCCYYWTYYB
ChIP-seq
Chen et al.(2011)
GSE11329_Sfpi1
0.995
0.963
SPI1
M09047_2.00
Homo sapiens
VRAAWGRGGAAGTGRNN
NNYCACTTCCYCWTTYB
Misc
Kulakovskiy et al.(2013)
SPI1_HUMAN.H11MO.0.A
0.995
0.963
Spi1
M09065_2.00
Mus musculus
VRARWGRGGAAGTGV
BCACTTCCYCWYTYB
Misc
Kulakovskiy et al.(2013)
SPI1_MOUSE.H11MO.0.A
0.995
0.963
Spi1
M09538_2.00
Mus musculus
WGAGGAAGTG
CACTTCCTCW
Misc
Heinz et al.(2010)
ThioMac-PU.1_GSE21512
0.995
0.963
SPI1
M10472_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PU1_Q4
0.995
0.963
SPI1
M10473_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PU1_Q6
0.995
0.963
SPI1
M10474_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_01
0.995
0.963
SPI1
M10475_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_07
0.995
0.963
SPI1
M10476_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_08
0.995
0.963
SPI1
M10477_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_Q5
0.995
0.963
SPIC
M03005_2.00
Homo sapiens
NRAAWSVGGAAGTM
KACTTCCBSWTTYN
SELEX
Jolma et al.(2013)
SPIC_1
0.979
0.637
Spic
M01480_2.00
Mus musculus
NNNNRGAAV
BTTCYNNNN
PBM
Wei et al.(2010)
Spic
0.972
0.625
Spic
M03009_2.00
Mus musculus
RAAAAGMGGAAGTW
WACTTCCKCTTTTY
SELEX
Jolma et al.(2013)
Spic_1
0.972
0.625
SPIB
M03008_2.00
Homo sapiens
NAAAAGMGGAAGTD
HACTTCCKCTTTTN
SELEX
Jolma et al.(2013)
SPIB_1
0.960
0.738
SPIB
M04803_2.00
Homo sapiens
DWDGVGGAAGTD
HACTTCCBCHWH
SELEX
Yin et al.(2017)
SPIB_eDBD_HT-SELEX
0.960
0.738
SPIB
M04805_2.00
Homo sapiens
NWWWRVGGAASTN
NASTTCCBYWWWN
SELEX
Yin et al.(2017)
SPIB_FL_HT-SELEX
0.960
0.738
SPIB
M02678_2.00
Homo sapiens
WSMGGAA
TTCCKSW
SELEX
Mathelier et al.(2014)
MA0081.1
0.960
0.738
SPIB
M09064_2.00
Homo sapiens
NRAAWGRGGAAGTGRRD
HYYCACTTCCYCWTTYN
Misc
Kulakovskiy et al.(2013)
SPIB_HUMAN.H11MO.0.A
0.960
0.738
Spib
M09068_2.00
Mus musculus
RAAAGRGGAAGTGRVWN
NWBYCACTTCCYCTTTY
Misc
Kulakovskiy et al.(2013)
SPIB_MOUSE.H11MO.0.A
0.960
0.738
SPIB
M09537_2.00
Homo sapiens
AAARVGGAASTG
CASTTCCBYTTT
Misc
Heinz et al.(2010)
OCILY3-SPIB_GSE56857
0.960
0.738
SPIB
M10519_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPIB_01
0.960
0.738
SPIB
M04804_2.00
Homo sapiens
DAWGRGGAAGTD
HACTTCCYCWTH
SELEX
Yin et al.(2017)
SPIB_eDBD_Methyl-HT-SELEX
0.960
0.738
SPIB
M04806_2.00
Homo sapiens
RWWWGRGGAAGTD
HACTTCCYCWWWY
SELEX
Yin et al.(2017)
SPIB_FL_Methyl-HT-SELEX
0.960
0.738
Elf5
M01490_2.00
Mus musculus
DNVVGGAARH
DYTTCCBBNH
PBM
Wei et al.(2010)
Elf5
0.727
0.425
ELF5
M02988_2.00
Homo sapiens
WNVMGGAAGTN
NACTTCCKBNW
SELEX
Jolma et al.(2013)
ELF5_1
0.727
0.425
ELF5
M02989_2.00
Homo sapiens
WNVMGGAARYN
NRYTTCCKBNW
SELEX
Jolma et al.(2013)
ELF5_2
0.727
0.425
Elf5
M03011_2.00
Mus musculus
WNVMGGAARYN
NRYTTCCKBNW
SELEX
Jolma et al.(2013)
Elf5_1
0.727
0.425
ELF5
M04756_2.00
Homo sapiens
NDNVMGGAAGBD
HVCTTCCKBNHN
SELEX
Yin et al.(2017)
ELF5_eDBD_HT-SELEX
0.727
0.425
ELF5
M04758_2.00
Homo sapiens
NAMCCGGAAGYN
NRCTTCCGGKTN
SELEX
Yin et al.(2017)
ELF5_FL_HT-SELEX
0.727
0.425
ELF5
M09054_2.00
Homo sapiens
VVVANVMGGAAGHDV
BHDCTTCCKBNTBBB
Misc
Kulakovskiy et al.(2013)
ELF5_HUMAN.H11MO.0.A
0.727
0.425
Elf5
M09076_2.00
Mus musculus
RGRAVRAGGAAGDRRNN
NNYYHCTTCCTYBTYCY
Misc
Kulakovskiy et al.(2013)
ELF5_MOUSE.H11MO.0.A
0.727
0.425
ELF5
M09534_2.00
Homo sapiens
ABVMGGAAGT
ACTTCCKBVT
Misc
Heinz et al.(2010)
T47D-ELF5_GSE30407
0.727
0.425
ELF5
M10501_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ELF5_01
0.727
0.425
ELF5
M04757_2.00
Homo sapiens
NABVAGGAAGTD
HACTTCCTBVTN
SELEX
Yin et al.(2017)
ELF5_eDBD_Methyl-HT-SELEX
0.727
0.425
ELF5
M04759_2.00
Homo sapiens
DABVAGGAAGTD
HACTTCCTBVTH
SELEX
Yin et al.(2017)
ELF5_FL_Methyl-HT-SELEX
0.727
0.425
For this family, TFs with SR scores >
0.717
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG017634.1
Ets
149
231
RLYQFLLDLLRNGDMKDSIWWVDKEKGTFQFSSKHKEALANRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFS
Links
Other
Ets
family TFs
Other
Alligator sinensis
TFs
254 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACOC_0000844001
Angiostrongylus costaricensis
ACOC_0000844001
I
ALUE_0000650501
Ascaris lumbricoides
ALUE_0000650501
I
ANCCAN_07957
Ancylostoma caninum
ANCCAN_07957
I
ANCCEY_15520
Ancylostoma ceylanicum
ANCCEY_15520
I
ANCDUO_00071
Ancylostoma duodenale
ANCDUO_00071
I
ASIM_0001003201
Anisakis simplex
ASIM_0001003201
I
ASU_03710
Ascaris suum
ASU_03710
I
Bm6776
Brugia malayi
Bm6776
I
DICVIV_12815
Dictyocaulus viviparus
DICVIV_12815
I
GPUH_0002134401
Gongylonema pulchrum
GPUH_0002134401
I
Hba_19892
Heterorhabditis bacteriophora
Hba_19892
I
HCOI00898900
Haemonchus contortus
HCOI00898900
I
HPBE_0000764601
Heligmosomoides bakeri
HPBE_0000764601
I
HPLM_0000552201
Haemonchus placei
HPLM_0000552201
I
L596_g5816
Steinernema carpocapsae
L596_g5816
I
L892_g3951
Steinernema scapterisci
L892_g3951
I
L893_g18096
Steinernema glaseri
L893_g18096
I
L898_g620
Steinernema monticolum
L898_g620
I
LOAG_02863
Loa loa
LOAG_02863
I
nAv.1.0.1.g00776
Acanthocheilonema viteae
nAv.1.0.1.g00776
I
NBR_0000887901
Nippostrongylus brasiliensis
NBR_0000887901
I
nDi.2.2.2.g05199
Dirofilaria immitis
nDi.2.2.2.g05199
I
NECAME_09605
Necator americanus
NECAME_09605
I
nLs.2.1.2.g05605
Litomosoides sigmodontis
nLs.2.1.2.g05605
I
nOo.2.0.1.g03339
Onchocerca ochengi
nOo.2.0.1.g03339
I
OESDEN_02547
Oesophagostomum dentatum
OESDEN_02547
I
OESDEN_11135
Oesophagostomum dentatum
OESDEN_11135
I
PTRK_0000025200
Parastrongyloides trichosuri
PTRK_0000025200
N
RSKR_0001156700
Rhabditophanes kr3021
RSKR_0001156700
N
scaffold5-EXSNAP2012.16
Pristionchus exspectatus
scaffold5-EXSNAP2012.16
I
SMU15029949
Schmidtea mediterranea
SMU15029949
I
SPAL_0000205900
Strongyloides papillosus
SPAL_0000205900
N
SSTP_0000922000
Strongyloides stercoralis
SSTP_0000922000
N
TCNE_0001890401
Toxocara canis
TCNE_0001890401
I
TELCIR_00805
Teladorsagia circumcincta
TELCIR_00805
I
WBGene00242147
Onchocerca volvulus
WBGene00242147
I
WUBG_05875
Wuchereria bancrofti
WUBG_05875
I