cassava31125.valid.m1 (Manihot esculenta)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 cassava31125.valid.m1 T181045_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.900 0.900
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.900 0.900
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava31125.valid.m1 FAR1 85 187

Links

Other FAR1 family TFs
Other Manihot esculenta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CADAFLAG00005079 Aspergillus flavus CADAFLAG00005079 I
ANIA_04361 Aspergillus nidulans CADANIAG00006097 I
CADAORAG00008017 Aspergillus oryzae CADAORAG00008017 I
ATEG_05575 Aspergillus terreus CADATEAG00004870 I
CC1G_13211 Coprinopsis cinerea CC1G_13211 N
CY34DRAFT_797070 Suillus luteus CY34DRAFT_797070 N
estExt_fgeneshPB_pg.C_60206 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_60206 I
EURHEDRAFT_472160 Aspergillus ruber EURHEDRAFT_472160 I
e_gw1.1.2325.1 Heterobasidion annosum e_gw1.1.2325.1 N
fgenesh1_pm.00609_#_584 Aspergillus carbonarius fgenesh1_pm.00609_#_584 I
GALMADRAFT_82940 Galerina marginata GALMADRAFT_82940 N
GLOTRDRAFT_90337 Gloeophyllum trabeum GLOTRDRAFT_90337 N
GSTUM_00004031001 Tuber melanosporum GSTUM_00004031001 I
HETIRDRAFT_244485 Heterobasidion irregulare HETIRDRAFT_244485 N
JAAARDRAFT_105377 Jaapia argillacea JAAARDRAFT_105377 N
LACBIDRAFT_301720 Laccaria bicolor LACBIDRAFT_301720 N
M404DRAFT_1002346 Pisolithus tinctorius M404DRAFT_1002346 N
M413DRAFT_7311 Hebeloma cylindrosporum M413DRAFT_7311 N
M422DRAFT_166226 Sphaerobolus stellatus M422DRAFT_166226 N
Moror_278 Moniliophthora roreri Moror_278 N
MPER_09631 Moniliophthora perniciosa MPER_09631 N
PAXRUDRAFT_823784 Paxillus rubicundulus PAXRUDRAFT_823784 N
PILCRDRAFT_5774 Piloderma croceum PILCRDRAFT_5774 N
PISMIDRAFT_55363 Pisolithus microcarpus PISMIDRAFT_55363 N
PLEOSDRAFT_165977 Pleurotus ostreatus PLEOSDRAFT_165977 N
SCHCODRAFT_104239 Schizophyllum commune SCHCODRAFT_104239 N
SCLCIDRAFT_1210571 Scleroderma citrinum SCLCIDRAFT_1210571 N
SERLA73DRAFT_176185 Serpula lacrymans SERLA73DRAFT_176185 N