FHY3 (Arabidopsis thaliana)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 AT3G22170 T178986_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00		 Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1		 (Direct) (Direct)
FHY3
M09540_2.00		 Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G22170.1 FAR1 84 186
AT3G22170.2 FAR1 84 186

Links

Other FAR1 family TFs
Other Arabidopsis thaliana TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.989
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.989
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.989
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.978
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.962
TCM_013043 Theobroma cacao TCM_013043 I 0.923
Bra031330 Brassica rapa Bra031330 I 0.922
Bo5g098280 Brassica oleracea Bo5g098280 I 0.911
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.911
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.911
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.900
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.900
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.900
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.900
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.900
Pm014859 Prunus mume Pm014859 I 0.900
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.900
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.900
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.900
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.900
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.900
MDP0000286803 Malus domestica MDP0000286803 I 0.900
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.889
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.878
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.878
PK08903.1 Cannabis sativa PK08903.1 I 0.878
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.867
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.867
Bo1g105420 Brassica oleracea Bo1g105420 I 0.856
mgf009829m Mimulus guttatus mgf009829m I 0.833
mgf014333m Mimulus guttatus mgf014333m I 0.833
30106.m000672 Ricinus communis 30106.m000672 I 0.727
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.727
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.716
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.716
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.716
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.705
TCM_002030 Theobroma cacao TCM_002030 I 0.705
Pm014858 Prunus mume Pm014858 I 0.705
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.705