Gorai.007G173400 (Gossypium raimondii)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Gorai.007G173400 T181504_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.909 0.909
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.909 0.909
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.716 0.716
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G173400.1 FAR1 79 166
Gorai.007G173400.2 FAR1 79 166
Gorai.007G173400.3 FAR1 79 166

Links

Other FAR1 family TFs
Other Gossypium raimondii TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_002030 Theobroma cacao TCM_002030 I 0.989
30106.m000672 Ricinus communis 30106.m000672 I 0.966
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.966
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.955
PK04639.1 Cannabis sativa PK04639.1 I 0.955
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.943
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.943
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.943
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.933
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.932
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.932
Pm014858 Prunus mume Pm014858 I 0.932
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.932
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.923
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.920
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.910
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.910
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.910
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.909
FAR1 Arabidopsis thaliana AT4G15090 D 0.889
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.889
mgf008053m Mimulus guttatus mgf008053m I 0.886
TCM_013043 Theobroma cacao TCM_013043 I 0.885
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.875
Bo6g054750 Brassica oleracea Bo6g054750 I 0.844
Bra040696 Brassica rapa Bra040696 I 0.844
MDP0000286803 Malus domestica MDP0000286803 I 0.773
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.761
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.761
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.761
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.761
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.761
PK08903.1 Cannabis sativa PK08903.1 I 0.761
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.756
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.756
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.756
Pm014859 Prunus mume Pm014859 I 0.756
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.756
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.744
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.744
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.744
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.744
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.733
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.733
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.722
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.722
FHY3 Arabidopsis thaliana AT3G22170 D 0.716
mgf009829m Mimulus guttatus mgf009829m I 0.700
mgf014333m Mimulus guttatus mgf014333m I 0.700