PK04639.1 (Cannabis sativa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 PK04639.1 T181979_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.875 0.875
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK04639.1 FAR1 127 214

Links

Other FAR1 family TFs
Other Cannabis sativa TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.966
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.955
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.955
Pm014858 Prunus mume Pm014858 I 0.955
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.955
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.943
TCM_002030 Theobroma cacao TCM_002030 I 0.943
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.943
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.943
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.932
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.932
30106.m000672 Ricinus communis 30106.m000672 I 0.932
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.932
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.920
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.920
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.910
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.910
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.910
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.898
mgf008053m Mimulus guttatus mgf008053m I 0.886
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.878
FAR1 Arabidopsis thaliana AT4G15090 D 0.856
Bo6g054750 Brassica oleracea Bo6g054750 I 0.856
Bra040696 Brassica rapa Bra040696 I 0.856
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.846
TCM_013043 Theobroma cacao TCM_013043 I 0.808
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.761
PK08903.1 Cannabis sativa PK08903.1 I 0.761
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.756
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.756
MDP0000286803 Malus domestica MDP0000286803 I 0.750
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.744
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.739
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.739
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.739
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.739
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.733
Pm014859 Prunus mume Pm014859 I 0.733
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.733
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.733
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.733
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.727
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.722
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.722
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.722
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.722
mgf009829m Mimulus guttatus mgf009829m I 0.711
mgf014333m Mimulus guttatus mgf014333m I 0.711