GLYMA20G26810 (Glycine max)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 GLYMA20G26810 T179493_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.875 0.875
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA20G26810.1 FAR1 48 135
GLYMA20G26810.2 FAR1 48 135

Links

Other FAR1 family TFs
Other Glycine max TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.989
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.932
PK04639.1 Cannabis sativa PK04639.1 I 0.932
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.921
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.920
Pm014858 Prunus mume Pm014858 I 0.920
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.920
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.920
TCM_002030 Theobroma cacao TCM_002030 I 0.909
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.909
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.909
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.899
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.899
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.899
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.898
30106.m000672 Ricinus communis 30106.m000672 I 0.898
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.898
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.898
mgf008053m Mimulus guttatus mgf008053m I 0.898
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.878
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.875
FAR1 Arabidopsis thaliana AT4G15090 D 0.856
Bo6g054750 Brassica oleracea Bo6g054750 I 0.856
Bra040696 Brassica rapa Bra040696 I 0.856
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.808
TCM_013043 Theobroma cacao TCM_013043 I 0.769
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.727
MDP0000286803 Malus domestica MDP0000286803 I 0.716
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.705
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.705
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.705
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.705
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.705
PK08903.1 Cannabis sativa PK08903.1 I 0.705
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.700
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.700
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.700
Pm014859 Prunus mume Pm014859 I 0.700
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.700