Bostr.0597s0142 (Boechera stricta)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Bostr.0597s0142 T181231_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.922 0.922
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.922 0.922
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0597s0142.1.p FAR1 65 154

Links

Other FAR1 family TFs
Other Boechera stricta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.955
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.955
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.955
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.944
FAR1 Arabidopsis thaliana AT4G15090 D 0.922
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.920
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.900
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.898
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.889
TCM_002030 Theobroma cacao TCM_002030 I 0.889
30106.m000672 Ricinus communis 30106.m000672 I 0.889
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.889
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.889
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.888
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.886
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.878
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.878
PK04639.1 Cannabis sativa PK04639.1 I 0.878
Bo6g054750 Brassica oleracea Bo6g054750 I 0.867
Bra040696 Brassica rapa Bra040696 I 0.867
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.867
Pm014858 Prunus mume Pm014858 I 0.867
mgf008053m Mimulus guttatus mgf008053m I 0.864
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.846
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.833
TCM_013043 Theobroma cacao TCM_013043 I 0.808
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.722
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.711
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.711
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.711
Pm014859 Prunus mume Pm014859 I 0.711
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.711
MDP0000286803 Malus domestica MDP0000286803 I 0.711
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.700
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.700
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.700
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.700
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.700
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.700
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.700
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.700
mgf009829m Mimulus guttatus mgf009829m I 0.700
mgf014333m Mimulus guttatus mgf014333m I 0.700
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.700
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.700
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.700
PK08903.1 Cannabis sativa PK08903.1 I 0.700