Cucsa.180090 (Cucumis sativus)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Cucsa.180090 T181082_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.898 0.898
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.898 0.898
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.180090.1 FAR1 46 133
Cucsa.180090.2 FAR1 46 133
Cucsa.180090.3 FAR1 46 133

Links

Other FAR1 family TFs
Other Cucumis sativus TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.943
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.932
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.921
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.921
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.921
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.920
Pm014858 Prunus mume Pm014858 I 0.920
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.920
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.920
PK04639.1 Cannabis sativa PK04639.1 I 0.920
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.910
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.909
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.909
TCM_002030 Theobroma cacao TCM_002030 I 0.909
30106.m000672 Ricinus communis 30106.m000672 I 0.909
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.909
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.909
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.900
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.898
FAR1 Arabidopsis thaliana AT4G15090 D 0.878
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.875
mgf008053m Mimulus guttatus mgf008053m I 0.875
Bo6g054750 Brassica oleracea Bo6g054750 I 0.867
Bra040696 Brassica rapa Bra040696 I 0.867
evm.TU.contig_36258 Carica papaya evm.TU.contig_36258 I 0.808
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.808
TCM_013043 Theobroma cacao TCM_013043 I 0.769
MDP0000286803 Malus domestica MDP0000286803 I 0.716
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.711
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.705
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.705
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.705
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.705
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.700
Pm014859 Prunus mume Pm014859 I 0.700
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.700