POPTR_0006s02140 (Populus trichocarpa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 POPTR_0006s02140 T180081_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.909 0.909
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.909 0.909
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.716 0.716
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s02140.1 FAR1 77 164

Links

Other FAR1 family TFs
Other Populus trichocarpa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.989
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.966
Pm014858 Prunus mume Pm014858 I 0.966
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.966
30106.m000672 Ricinus communis 30106.m000672 I 0.955
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.955
TCM_002030 Theobroma cacao TCM_002030 I 0.943
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.932
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.932
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.932
PK04639.1 Cannabis sativa PK04639.1 I 0.932
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.920
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.920
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.920
FAR1 Arabidopsis thaliana AT4G15090 D 0.909
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.909
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.909
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.909
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.898
mgf008053m Mimulus guttatus mgf008053m I 0.898
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.886
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.885
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.852
Bo6g054750 Brassica oleracea Bo6g054750 I 0.833
Bra040696 Brassica rapa Bra040696 I 0.833
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.761
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.750
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.750
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.750
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.750
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.750
Pm014859 Prunus mume Pm014859 I 0.750
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.750
MDP0000286803 Malus domestica MDP0000286803 I 0.750
PK08903.1 Cannabis sativa PK08903.1 I 0.750
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.739
TCM_013043 Theobroma cacao TCM_013043 I 0.739
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.739
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.739
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.739
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.739
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.739
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.739
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.727
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.727
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.722
FHY3 Arabidopsis thaliana AT3G22170 D 0.716
mgf009829m Mimulus guttatus mgf009829m I 0.716
mgf014333m Mimulus guttatus mgf014333m I 0.716
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.705
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.705
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.705